Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00185 ATGGACGGTGGTGATGGGACTGTGAGGCTTGGGGCTCTGAACATGAAGTCGGATCGAAGCGGATTTGATTTAGGCCCCGATGTGTCTGTTTCGTCTCCGGTGACCAGGCAGAAAGCCGCCGCTGCTAAGCAGTTCATTGAGAATCATTACAAGAACTATCTCCAAGGTCTTCAGGATCGCAAGGACAGACGGACAACGCTTCAACGAAGAGTGCAAGAAGCTCAGATGTCGGCAGAAGAACAAGAAGAGATGCTGAGGAACTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATCGATGACTTTGAGCAATTAACAGTCATCGGTAAAGGTGCATTCGGCGAGGTTAGATTATGTCGTGCAAAAGGCACTGGGGAAATTTTTGCCATGAAAAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCTGAGAGGAATTTACTTGCAGAGGTTGATAGTAGGTGCATTGTGAAACTCTTTTATTCTTTTCAAGATTCTGAGTTCTTATACCTTATTATGGAGTATTTACCTGGTGGTGACATTATGACGTTGCTAATGAGAGAAGACATTCTGTCCGAGGATGTTGCTCGCTTTTACATAGCAGAGAGCATTTTAGCTATTCATTCGATTCATCAGCACAATTATATACATAGGGATATAAAACCAGATAACTTGATCCTAGATAAAAATGGTCATCTGAAGCTTTCAGATTTTGGCTTGTGCAAGCCTCTGGATGATAAGTATTCAAGTATACTTTTGAATGACGAAGACTTGACTGCCCAGCAGACCAAAAGTGAAGGTCAAGATCATACTGACTCTAATGGATCCCAATGGATGATGCCGAAAGAACAAATTCAACAGTGGAAGCGTAATCGTCGTGCGTTGGCTTTTTCAACTGTTGGGACCCTGGATTATATGGCACCTGAAGTATTGCTTAAGAAAGGGTATGGAATGGAGTGTGATTGGTGGTCATTAGGGGCCATTATGTATGAGATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACCTTCCGCAAGATAATAAATTGGCGAACTTGCCTGAAATTTCCCGAGGAACCAAAAATCTCTGAGCAAGCCAAGGACCTGATCAGCCACTTGCTTTGTGATGTTGAAACAAGGTTGGGAACACGAGGAGTAGAAGAAATAAAGGCACATCCATGGTTCAAAGGGATTCAGTGGGATAAGCTGTATGAAATGGAACCTGCATATAAACCAACTGTCACTGGAGAACTAGACACTCAGAACTTCGAGAAGTTTCCTGAGGTTCAAGACCCTCCCTCAGAAATGCCAACTGTTGGACCTTGGAGAAAGATGCTAACTTCAAAAGATACGAATTTCATTGGATTTACTTTCAAGAAGTCAAACGTCAAATCACTTGAGGGTACAGGTACAAATGAACAATATAATGTCACTTCCTCTTCTCATATTCATTTGCATATATATCGTTTTGAAATAAAGTACAACCAGGACAATTTGTAG 1548 42.31 MDGGDGTVRLGALNMKSDRSGFDLGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRTTLQRRVQEAQMSAEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYIHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNDEDLTAQQTKSEGQDHTDSNGSQWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPKISEQAKDLISHLLCDVETRLGTRGVEEIKAHPWFKGIQWDKLYEMEPAYKPTVTGELDTQNFEKFPEVQDPPSEMPTVGPWRKMLTSKDTNFIGFTFKKSNVKSLEGTGTNEQYNVTSSSHIHLHIYRFEIKYNQDNL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 795624 800759 + CmaCh05G001850.1 Cma05g00185 294303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00185 515 SMART serkin_6 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00185 515 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma05g00185 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cma05g00185 515 CDD STKc_NDR_like 106 475 - -
Cma05g00185 515 Pfam Protein kinase C terminal domain 430 474 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cma05g00185 515 Pfam Protein kinase domain 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00185 515 Gene3D Transferase(Phosphotransferase) domain 1 194 428 - -
Cma05g00185 515 SMART pkinase_C_6 412 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma05g00185 515 ProSiteProfiles Protein kinase domain profile. 108 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00185 515 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 500 - -
Cma05g00185 515 SUPERFAMILY Protein kinase-like (PK-like) 85 463 IPR011009 -
Cma05g00185 515 Coils Coil 64 101 - -
Cma05g00185 515 Gene3D Phosphorylase Kinase; domain 1 99 193 - -
Cma05g00185 515 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Cma05g00185 515 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 500 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00185 Cma12g00554 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00185 Cma-Chr5:795624 Cma08g01079 Cma-Chr8:6729107 0 dispersed
Cma12g00554 Cma-Chr12:2884467 Cma05g00185 Cma-Chr5:795624 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68569 PF00069 Pkinase 1.50E-64 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00185 K08790 - csv:101222805 954.896