Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00199 ATGGTGATTCTCAGATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTAAAGAGTCACCATCTGGCTGCCCGAAGTTTCTTCTCTCTGTTGTCTCATCGTTCTTCTTTCTCAGATTTTCCGCTGAGAGTTTCTTCTGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGCTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTATCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGATTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAA 720 43.75 MVILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHRSSFSDFPLRVSSADCGYLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 846947 849022 - CmaCh05G001990.1 Cma05g00199 294317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00199 239 PANTHER SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIAL 1 239 IPR025397 GO:0006099|GO:0045273
Cma05g00199 239 Pfam Succinate dehydrogenase subunit 5, mitochondrial 1 239 IPR025397 GO:0006099|GO:0045273
Cma05g00199 239 PANTHER SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIAL 1 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00199 - - - csv:101204503 383.259
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00522 Cma-Chr12:2715043 Cma05g00199 Cma-Chr5:846947 1.06E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g787 . . . . . . . . . Cmo12g00463 . . . Car12g00494 Sed10g1288 . Cpe07g00465 Bhi04g00321 Tan02g1884 Cmetu03g1563 . Hepe10g0711 . Lcy13g2040 Cla08g01547 Cam08g2042 Cec08g1620 Cco08g1753 Clacu08g1730 . Cre08g1514 . . Cone17ag0832 Cone20ag0178 . . . Cme03g02013 Blo17g00844 . Bda08g01337 . . Bpe05g00058 . . . . . . Cma05g00199 Car05g00166 . Cpe11g00163 . . . . . . . . . . . . . . . Lsi08g01451 Csa02g01989 Chy03g01518 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008636 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00199 Cma_Chr05 FPKM 31.254223 33.753914 22.760389 20.025566 37.615467 34.609634 42.386536 23.292608 26.936844 30.592943