Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00201 ATGTCAGGGATGGAACGCCTTCAGAGGATGTTTGCCGGTGCCGGTGGTGCGTTGGGACACCCTCCTCCGGACTCCCCCACCTTAGATTCTTCCGAGCAGGTCTATATCTCCTCGCTCGCGCTCCTCAAGATGCTCAAGCACGGAAGAGCTGGGGTTCCGATGGAGGTGATGGGTTTGATGCTGGGAGAGTTTGTTGATGAGTACACGGTTCGTGTTGTTGACGTCTTTGCCATGCCCCAAAGTGGTACTGGTGTTAGTGTCGAAGCTGTCGATCATGTTTTTCAGACCAACATGCTCGATATGCTTAAACAGACTGGGCGGCCTGAGATGGTCGTGGGTTGGTATCATTCTCATCCAGGTTTTGGATGTTGGCTATCTGGTGTTGATATTAATACACAACAGAGTTTTGAGGCTCTGAATCAGAGGGCTGTCGCGGTGGTCGTGGATCCAATCCAGAGTGTTAAGGGGAAGGTGGTGATCGATGCTTTTCGTCTAATTAACCCTCAGACTATGATGCTTGGGCAGGAACCACGCCAAACAACTTCCAACCTCGGGCATCTTAATAAGCCATCTATTCAAGCATTAATCCATGGGTTGAACCGACACTATTACTCGATTGCAATAAACTACAGGAAGAATGAGCTTGAGGAGAAGATGTTGCTCAACCTTCACAAGAAGAAATGGACTGATGGTCTGACACTTCGCCGATTCGATACCCATTCGAAAACCAATGAGCAGACCATTCAAGAAATGCTGAACTTGGCTATCAAGTACAACAAAGCAGTCCAGGAGGAAGATGAGTTGCCCCCTGAGAAGCTCGCAATAGCAAATGTTGGCAGACAAGATGCTAAGAAACACCTTGAAGAACATGTCTCCAACTTGATGTCGTCAAACATCATCCAAACATTAGGAACAATGCTCGACACGGTAGTATTTTGA 939 47.82 MSGMERLQRMFAGAGGALGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTNEQTIQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIIQTLGTMLDTVVF 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 850563 853003 - CmaCh05G002010.1 Cma05g00201 294319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00201 312 ProSiteProfiles MPN domain profile. 34 169 IPR037518 -
Cma05g00201 312 SMART pad1_6 33 168 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma05g00201 312 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 30 141 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma05g00201 312 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 3 312 - -
Cma05g00201 312 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 14 HOMOLOG 3 312 IPR035299 GO:0008237|GO:0061578
Cma05g00201 312 Pfam Maintenance of mitochondrial structure and function 176 297 IPR024969 -
Cma05g00201 312 CDD MPN_RPN11_CSN5 23 289 - -
Cma05g00201 312 Gene3D Cytidine Deaminase, domain 2 20 237 - -
Cma05g00201 312 SUPERFAMILY JAB1/MPN domain 34 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00201 K03030 PSMD14, RPN11, POH1; 26S proteasome regulatory subunit N11 - zju:107420882 611.298
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01854 Cma05g00201 CCT
Cma05g00201 Cma09g00215 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00132 Cma-Chr1:596698 Cma05g00201 Cma-Chr5:850563 2.51E-06 dispersed
Cma05g00201 Cma-Chr5:850563 Cma12g00290 Cma-Chr12:1486523 4.60E-37 dispersed
Cma01g01854 Cma-Chr1:12216182 Cma05g00201 Cma-Chr5:850563 0 wgd
Cma05g00201 Cma-Chr5:850563 Cma09g00215 Cma-Chr9:927514 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g789 . Blo12g00949 . Bda03g00221 . Bpe04g00188 Bma04g00175 . Cmo05g00200 . Cma01g01854 Cma09g00215 . . . Cpe06g00150 . Bhi04g00319 Tan02g1886 . . Hepe10g0709 . Lcy13g2038 Cla08g01545 Cam08g2040 Cec08g1618 Cco08g1751 Clacu08g1728 . Cre08g1512 . . Cone17ag0830 Cone20ag0176 Lsi04g01579 Csa04g02390 . . . Blo18g00834 . . Bpe02g01675 . Bma01g00780 . Sed02g1024 Cmo01g01915 Cmo09g00208 . Cma05g00201 Car05g00167 Car09g00183 Cpe11g00165 Cpe02g00168 Bhi09g03345 Tan01g4815 Cmetu07g1253 . Hepe01g1743 Mch11g0270 . Cla05g02023 Cam05g2173 Cec05g2189 Cco05g2237 Clacu05g2166 Cmu05g2034 Cre05g2162 . . Chy07g00117 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002514 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 2 3 2 1 1 2 2 1 2 2 2 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00201 Cma_Chr05 FPKM 43.422413 48.092041 46.003124 45.799446 52.458622 53.217209 51.640217 34.026157 35.341461 33.445866