Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00206 ATGCCTTTCTTTCACAAAAGCGCTTCAAATTCTCGGCTTCAACAGAAGGCGGCCGATTCTGATTTTTCCGTTGTTCAAACCGAATCGCTTGTTCAGCGGCGGCTCACCAGACAGAGGAAGCTCCGGCATCTTACGGATCGAGAAATTGGCGTTGAACTCCCCCGATCATTTCCCGATTCCCCTGATTTATCTGCAAAGCCTAGATCGCCTCTTGGGGGTTCCGAACGTTGGTCCTCGTCGCCTTTGCCCCAGCCTTTGCCTCTGCCGGAGTTATTTCCGGTTCGGAATCCAGAGTCCGATTCTTGGTTTGCTAGCCAAGGCCGTGTGGTCTCGCCTATTGAAACTCCTGTCCGGAAGAGCTCTGATCGTGCAACAACGAATGTAAATGGAGGTCTGGGCAACAATCAAAGGCGAGTTGCTACAGATTGTAAGTTGGAAGTTGTTAATGGCAATACAGGAGGAACTGGGGCTAACACATTTACAAGCCCTCATAGTCCCTCTGTGAACTCAGGTAAATCCATTTCGATTAAGGAGTTTGTTTTTAGTTGTTTGGATCAGCCTCCAAACAGCAAAGTCAGGGGATCCCCAACTCATCCCAGTATTCGAAGGGGTAACTACAGTTTGACACCTAAGACTTTGTCGTCAAAGAGTGCCCCAACAAGCATTTTACCGAGTCCGACCGCTAGCCCACGAAGATCATATACTGGAGATCTTTTCGTTTCTGGTTTGCCTCGCCATGACTATCAGGAATCTCCTTTCAATAATTCTCCCAGAGTCCCACCCCTTAAGACTCCACACACTTCTCAACCTTCTCCTCTCCATAGCCCGTCCGCTCGAAGTTTCGTAAGCAATCCCAAATCTCCTAACGATGTGAAATTTCCGACGCATTCTAAGTTACAAAAAGATAGTAGTACAGATTGGTCTGAAAACCTCGGTCATGTCAATGCTCATCCATTGCCACTTCCTCCTCCATTAGCACACTCTTCACAATCATCTCCACAGTCCCTTTCGTCGAGCGTTCATCATGTTAATGAGAAGCCATACATTTCATCTACGAAAAGTCGGTGGCAAAAAGGAAAGCTCATTGGACGTGGTACGTTTGGAAGTGTATATCTTGCAACCAACAGTGAAACTGGAGCTTTATGCGCAATGAAAGAAGTTGACCTCATTCCTGATGATCCTAAATGTGCTGAAAGTATAAAGCAACTAGAGCAGGAGATTAAAGTTCTCAGTCAACTTAAGCATCCAAATATTGTGCAGTATTATGGAAGCGAAATAATCGATGATCATTTCTATATATATTTGGAGTATGTTTATCCCGGGTCGATAAACAAATACGTTCGTGAACGTTGTGGAGCCATTACAGAATCTATTGTTCGCAATTTCACCCGACATATTCTCTCTGGACTGGCTTACTTGCATAGCACAAAAACAATCCACAGGGATATCAAAGGTGCAAACTTGTTAGTTGACTCGTCGGGCGTTGTCAAACTTGCAGATTTCGGGATGGCAAAACATCTGACAGGGCAATATGATCTTTCTTTGAAGGGTAGTCCGTACTGGATGGCTCCGGAGGTCATGAAGGCTGCTATGTTGAAAGATGCCAACCCTAATCTTGCTTTGGCAGTTGACATTTGGAGTCTGGGTTGCGCCATAATTGAAATGCTGGATGGAAAACCTCCGTGGAGTGAGTTTGAAGGGCATCAAGCCATGTTCAAGGTGTTGAATAAAACCCCGCCTGTCCCGGAAAAGCTATCTCCAGAAGGGAAAGACTTCCTCCAGTGCTGCTTTCAAAGGAATCCAGCTGACAGACCAACAGCCATGGCGCTCCTTGACCATCCTTTCTTAAGATCCTCAAATGACTCGAATATTTCAACCCCCACGTCTGCATTTTTGACAATGAACCGCATGGAAAAACTCTTGAGTCCGAAGGACCACCGTAGTCCCAAAGGAGATCAGGCGCAAAACTCTTCTGGAACTTTGGCTGAAAATGTTTATCTGTCGTGCCGTAGCCCTTCAACGAACATTTCAAGCAATATTCCTGCCAGTGCCGTTAACAACCATCCCTTTGCTGTTTCAAGGACTCATAAAAGGGAAGTGCCTCACCTCTGA 2112 45.98 MPFFHKSASNSRLQQKAADSDFSVVQTESLVQRRLTRQRKLRHLTDREIGVELPRSFPDSPDLSAKPRSPLGGSERWSSSPLPQPLPLPELFPVRNPESDSWFASQGRVVSPIETPVRKSSDRATTNVNGGLGNNQRRVATDCKLEVVNGNTGGTGANTFTSPHSPSVNSGKSISIKEFVFSCLDQPPNSKVRGSPTHPSIRRGNYSLTPKTLSSKSAPTSILPSPTASPRRSYTGDLFVSGLPRHDYQESPFNNSPRVPPLKTPHTSQPSPLHSPSARSFVSNPKSPNDVKFPTHSKLQKDSSTDWSENLGHVNAHPLPLPPPLAHSSQSSPQSLSSSVHHVNEKPYISSTKSRWQKGKLIGRGTFGSVYLATNSETGALCAMKEVDLIPDDPKCAESIKQLEQEIKVLSQLKHPNIVQYYGSEIIDDHFYIYLEYVYPGSINKYVRERCGAITESIVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGVVKLADFGMAKHLTGQYDLSLKGSPYWMAPEVMKAAMLKDANPNLALAVDIWSLGCAIIEMLDGKPPWSEFEGHQAMFKVLNKTPPVPEKLSPEGKDFLQCCFQRNPADRPTAMALLDHPFLRSSNDSNISTPTSAFLTMNRMEKLLSPKDHRSPKGDQAQNSSGTLAENVYLSCRSPSTNISSNIPASAVNNHPFAVSRTHKREVPHL 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 874311 878220 - CmaCh05G002060.1 Cma05g00206 294324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00206 703 MobiDBLite consensus disorder prediction 118 135 - -
Cma05g00206 703 MobiDBLite consensus disorder prediction 7 23 - -
Cma05g00206 703 SUPERFAMILY Protein kinase-like (PK-like) 331 653 IPR011009 -
Cma05g00206 703 SMART serkin_6 356 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00206 703 MobiDBLite consensus disorder prediction 44 84 - -
Cma05g00206 703 Gene3D Transferase(Phosphotransferase) domain 1 352 656 - -
Cma05g00206 703 MobiDBLite consensus disorder prediction 116 135 - -
Cma05g00206 703 ProSiteProfiles Protein kinase domain profile. 356 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00206 703 MobiDBLite consensus disorder prediction 248 294 - -
Cma05g00206 703 Pfam Protein kinase domain 357 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00206 703 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524
Cma05g00206 703 MobiDBLite consensus disorder prediction 328 344 - -
Cma05g00206 703 MobiDBLite consensus disorder prediction 185 344 - -
Cma05g00206 703 MobiDBLite consensus disorder prediction 1 23 - -
Cma05g00206 703 MobiDBLite consensus disorder prediction 188 234 - -
Cma05g00206 703 PANTHER - 1 693 - -
Cma05g00206 703 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 693 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00206 - - - cmo:103487921 1077.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00206 Cma12g00514 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00206 Cma-Chr5:874311 Cma16g00114 Cma-Chr16:522963 3.82E-109 dispersed
Cma12g00514 Cma-Chr12:2651023 Cma05g00206 Cma-Chr5:874311 0 wgd
Cma03g00991 Cma-Chr3:6986502 Cma05g00206 Cma-Chr5:874311 3.12E-156 wgd
Cma05g00206 Cma-Chr5:874311 Cma07g00720 Cma-Chr7:3172737 2.35E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g828 . . . . . . . . Cmo05g00205 Cmo12g00455 . . . Car12g00485 . . Cpe07g00458 Bhi04g00304 . . . . . . Cla08g01536 Cam08g2032 Cec08g1607 Cco08g1740 Clacu08g1719 . Cre08g1502 Cone4ag1555 Cone7ag1397 . . . . . Cme03g02003 Blo17g00831 . Bda08g01320 Bda01g01685 . Bpe05g00067 . . . . . Cma12g00514 Cma05g00206 Car05g00172 . Cpe11g00172 . . . . . . . . . . . . . . . Lsi08g01440 . Chy03g01508 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008635 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68570 PF00069 Pkinase 3.90E-68 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00206 Cma_Chr05 FPKM 6.718238 6.328312 4.154772 4.021865 3.239068 3.54548 2.996599 2.672647 2.263969 2.415501