Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00209 ATGGACATGAAAGAAGCAATCAGAAACCATGGCGACGTCGCCATGGCCATCACCAAGCGCATTCTCCAACACGACGAAGCCAAGGGTTCCAACGTTGTGATATCCCCCTTGTCAATCTACGTGCTTCTCAGCCTTGTCGCTGCCGGCTCCAAGGGCCCCCCGCTGGATCAACTTCTGTCCTTCCTCAAATCAAACTCCATCGACAACCTCAACGCCTTCGCTTCTCATATCATAGACAAGGTTTTTGCTGATGCCTCTTCCTGCGGCGGACCTCGCCTCGCATTTGCCAATGGCGTTTGGATCGATCAATCACTTTCTCTCAAGCCTTCTTTCCAACAGGTTGTGGACAAATATTACAATGCTATGCTCAGTCAAGTCAATTTTCAACAGCGTGATTTCTACCTTGTTGATGGGAGCTCAGTTGAAGCGCCCTTTATGACCGACAAGGAGGACCAATATGTAGCTGTGTTCGATGGGTTTAAGGTTCTTGCATTGCCGTACAGTCAAGGTTCTGACCCACGTCGTTTTTCTATGTACTTCTTTCTCCCAGATAGCAAGGATGGACTGGCAAGTTTGATTGAAAAGTTAGATTCTGAGCCTGGGTTCATCGACCGCCACATTCCACGTAAAAAACATGAGCTGGGGAGATTTATGATTCCAAAGTTTAAAATTTCCTTTGGGATTGAAGTTTCCGATGTTTTAAAGAAGCTAGGATTGGCGCTGCCTTTCTCTGAAGGAGGGTTGCTAGAAATGGTGGATCCCCCAATGGCTCAAAAGCTTCGTGTTTCTAAAATATTCCACAAGGCGTTTATTGAGGCTAATGAAGAAGGCACAGAAGCTGCAGCTTCTTCAGCTGCTGTTATACGACTTATGAGAGCGCCTATAGGTTTGATACAGTTCGTTGCCAATCACCCATTCTTGTACTTAATTAGGGAAGATAAGTCAGGAACTTTACTTTTTATTGGGCAGGTGTTAAACCCTCTTGAAGATTGA 993 45.82 MDMKEAIRNHGDVAMAITKRILQHDEAKGSNVVISPLSIYVLLSLVAAGSKGPPLDQLLSFLKSNSIDNLNAFASHIIDKVFADASSCGGPRLAFANGVWIDQSLSLKPSFQQVVDKYYNAMLSQVNFQQRDFYLVDGSSVEAPFMTDKEDQYVAVFDGFKVLALPYSQGSDPRRFSMYFFLPDSKDGLASLIEKLDSEPGFIDRHIPRKKHELGRFMIPKFKISFGIEVSDVLKKLGLALPFSEGGLLEMVDPPMAQKLRVSKIFHKAFIEANEEGTEAAASSAAVIRLMRAPIGLIQFVANHPFLYLIREDKSGTLLFIGQVLNPLED 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 888852 890216 - CmaCh05G002090.1 Cma05g00209 294327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00209 330 PANTHER SERPIN-ZX-LIKE 130 328 - -
Cma05g00209 330 Gene3D Antithrombin, subunit I, domain 2 29 128 IPR042178 -
Cma05g00209 330 SUPERFAMILY Serpins 7 327 IPR036186 -
Cma05g00209 330 Pfam Serpin (serine protease inhibitor) 12 131 IPR023796 -
Cma05g00209 330 Pfam Serpin (serine protease inhibitor) 129 327 IPR023796 -
Cma05g00209 330 SMART serpin2 15 327 IPR023796 -
Cma05g00209 330 Gene3D - 248 291 - -
Cma05g00209 330 Gene3D - 129 235 IPR042185 -
Cma05g00209 330 Gene3D Serpins superfamily 297 329 - -
Cma05g00209 330 CDD serpinP_plants 8 327 - -
Cma05g00209 330 ProSitePatterns Serpins signature. 300 310 IPR023795 -
Cma05g00209 330 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 130 328 IPR000215 GO:0004867|GO:0005615
Cma05g00209 330 PANTHER SERPIN-ZX-LIKE 13 131 - -
Cma05g00209 330 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 13 131 IPR000215 GO:0004867|GO:0005615
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00209 K13963 SERPINB; serpin B - csv:101202809 407.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00207 Cma-Chr5:879442 Cma05g00209 Cma-Chr5:888852 1.49E-39 dispersed
Cma05g00208 Cma-Chr5:883284 Cma05g00209 Cma-Chr5:888852 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g831 . . . . . . . . Cmo05g00215 . . . . . Sed08g1817 . . Bhi04g00301 Tan02g1904 Cmetu03g1500 . Hepe10g0696 . Lcy13g2026 Cla08g01534 Cam08g2027 Cec08g1603 Cco08g1738 Clacu08g1716 . Cre08g1499 . . Cone17ag1302 . . Csa04g02371 . Cme03g02000 Blo17g00830 . Bda08g01319 . . Bpe05g00068 . . . . . . Cma05g00209 . . Cpe11g00174 . . . . . . . . . . . . . . . Lsi08g01436 Csa02g02005 Chy07g00100 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000825 2 1 6 2 1 2 0 2 2 4 1 2 3 4 4 7 2 3 2 2 4 1 2 5 5 4 4 7 5 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00209 Cma_Chr05 FPKM 2.706445 2.946145 29.36508 26.530745 0.53446 0.0 0.740278 0.439831 0.0 0.0