Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00213 ATGTTTACCTCCATCCATATGATCACCAACACCACGGCACCGCCCTTGCCGGACCTATCCTTGCAGATAAGCCCACCCTCTGATTCCGGCAGCAGCGGCAGCGATCTGACCCATGAGAATGCTGCGTTTCTTCTTCCTCCCAAAACCCATTTCAAGGGAGATGCCAAAATGGGTTTTGGGATTAAAAGAAGAATTAGAGCTCCAAGAATGAGATGGACCACCACTCTTCATGCCCATTTCGTCCACGCTGTTCAGCTCCTTGGCGGCCATGACAGGGCAACACCCAAATCTGTACTGGAGCTGATGAATGTCAAAGATTTAACCCTAGCTCATGTAAAAAGCCATTTACAGATGTATAGAACAGTGAAAGGCACAGACAAAGCAACCGACACAGGCTTGAAGAACCAAAGTCAAGAAATTAATGTCAATGGAGCTTCAAAGTGTGAGAATTCTAACCCACCACTTACAATGCGGAAAAGCCCTAATCAAATCTGGAACTTGTTCTCTTCATCAATGGAGACAAATCGGGAGATGACGAGCAGATGGAGTCAACATAGCAACAATAGTATTGGAAACAACCAGCAGCAGCAGCAGAAGGACCGACAGAATGGAGACGCAAGCATGAAATTCTTGAGCGGCGTGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATAATAATAACAATACTGTGAACTTAGACTTTAGCCTCGGATGCCCTAATTCTCTAACCATCCATTCTAATCCTTCTCAAATGCTAAACTCAAAACAAACCCTTTCTTTCTAG 798 45.24 MFTSIHMITNTTAPPLPDLSLQISPPSDSGSSGSDLTHENAAFLLPPKTHFKGDAKMGFGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQMYRTVKGTDKATDTGLKNQSQEINVNGASKCENSNPPLTMRKSPNQIWNLFSSSMETNREMTSRWSQHSNNSIGNNQQQQQKDRQNGDASMKFLSGVKKQRLEGSCLSLCDHNNNNTVNLDFSLGCPNSLTIHSNPSQMLNSKQTLSF 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 902076 904341 + CmaCh05G002130.1 Cma05g00213 294331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00213 265 MobiDBLite consensus disorder prediction 16 37 - -
Cma05g00213 265 MobiDBLite consensus disorder prediction 175 205 - -
Cma05g00213 265 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 28 253 - -
Cma05g00213 265 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 28 253 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cma05g00213 265 Gene3D - 67 123 - -
Cma05g00213 265 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 68 121 IPR006447 GO:0003677
Cma05g00213 265 SUPERFAMILY Homeodomain-like 65 121 IPR009057 -
Cma05g00213 265 Pfam Myb-like DNA-binding domain 69 120 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00213 Cma09g00194 CCT
Cma05g00213 Cma12g00506 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00213 Cma-Chr5:902076 Cma06g00631 Cma-Chr6:3098366 5.41E-37 dispersed
Cma01g01879 Cma-Chr1:12314351 Cma05g00213 Cma-Chr5:902076 9.09E-38 wgd
Cma12g00506 Cma-Chr12:2616517 Cma05g00213 Cma-Chr5:902076 2.79E-54 wgd
Cma05g00213 Cma-Chr5:902076 Cma09g00194 Cma-Chr9:809303 1.90E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35030 PF00249 Myb_DNA-binding 7.00E-06 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00213 - - csv:101219131 285.419