Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00216 ATGCCAAGAAAATTCATCAATTTCCCACAAAATTCAATCCAAACACCAATATTTTTACTTCTTCTAGCGTTAACACTCAAAGCAGAGGCTGAATGTTCAAAATCATGTAGTCCCAACCACATCCCATATGATTTTCCCTACCCATTCGGCTTCTCCGCCGGCTGCGCAATCCGCTTGGACTGCAATCACGACGGCGCCGCCACGATCGGGGAATTCCCTGTCCAATTAATCAACTCCGACCACATCAAAGTCGTTATCAAAGCCAAATGCAACCGCCGTTTGCACACAATCCGCCAATTCTTCAGCCCCCACTACGCCCCAACGGCCAACAACGCCATTCTTTTACAAAACTGTTCGTCTCCGATTTCGACTTGCCTTTTACCCACCACGATGGTTCAGACCAAATTCGAATCCCCCGATTGCTCTGTTAATCGCACTAGCATAAGCTGCTACACCCAAAACAACACCGCTTCCGCCGCTTTCTTGGACTTCAAAAACCTCACCGGAACCAACTGCGATTACCTTCTCTCGTCCATTTCCGCGGAGGCGCTCAACAGCAACACCTCTGCTGGAATTTCTCTGGAGATTCAGACTGTGGATCTGGGTTGGTGGCTGCAGGGGCCCTGCCGCCAGTCCTGCCATAAAGATGCTAACTGTACGGAGCTTATATCGCCGAGTGACGGGAAGCTGTCTCATCGGTGCCGCTGCCGGGAAGGGTTGGTCGGCGACGGGTATTTGACCGGCACTGGCTGCCGGAAAGCTTCAAATTGCTATGCCACTAAGTACACTCTCGCCCAATGCGGAACATCAACAACTGCCACAAGAACCGCCGTCCTCGTCGGAACTATAATCGCCGGAGCCTTCCTCCTCGTTACTCTCCTTCTATTCTGCTGCTTCATCCGCCGTCGTTCCAATCTCAAATCTATACACCTCAACAAAATCACCAAACGCCGCCTCGCAGAAGCCACAACCGACGCCGGCGTATCCACCATCCACCTCTACACCTACAAAGAGATCCTAAAAGCCACCCATAACTTCTCCGAGGACTACCGCCTTGGCACCGGCGCATACGCCTCCGTCTACGTCGGGAAATTACGCGGCGAATGGGTCGCAATTAAACGCCTAAAAAATCGAGACCCCGATACTATCCAACAAGTTTTAAACGAAATCAACCTCATCTCATCTGTCAGCCACCCTAACCTCGTCCGCCTCCTTGGCTGCTCCATGGAATCCGGCGACCAAATCCTCGTCTACGAATTCATGCCCAACGGCACTCTGTTCCAACATTTACAGAAACAGAGGGGCACCGGCCTCCCCTGGCTTGTCCGCCTCAATATCGCCGTCGAAACCGCTAATGCAATCGCTCATCTCCATTCTGCAATTAACCATCCGATCTTCCACAGAGACATTAAATCCAGTAACATATTACTTGATCATAATCTCAAATCGAAAGTGGCGGATTTCGGGCTTTCGAGATTGGGGATGGCCGAAATTTCTCACATTTCCACGGCGCCTCAGGGGACACCGGGATATCTCGATCCGCAGTACCATCAGGATTTTCATCTCTCCGACAAGAGCGACGTGTACAGCTTCGGCGTAGTCCTTGTCGAATTGATCACCGCCATGAAAGTGGTGGATTTCTGCCGGCCGAAAGACGAGGTCAATTTGGCCGGTCTGGCAGTCGATCGGATCGGGAATGGGCAGCTGAGAGTAATTGTTGACCCGTTAATGGAGATGGAGTTAGACGAATGGGGAAGTTCGTCGGTGGAGAAGGTGGGGGAGGTGGCGTTCAGATGCCTGGCGTTTAATCGGGATGTAAGACCGTCGATGGTAGAGGTGGCGGCGGAGCTGGAGGAGATACGGCGGAGCAGGTGGGATAAAGGGGGAGTGAAGTGTAAGGAAATAGTTGAAAGTGGAAGCTGGAAGTCTAGCCATGGAGGAGGGGATTACTTTTCCAGAGGCTCAGTCCAAGATTCGTGGCAGAGTGAACCGAGCTCACCATCTTCCAATAGTTTGTTAAATAATATTCCTTTATGA 2037 51.4 MPRKFINFPQNSIQTPIFLLLLALTLKAEAECSKSCSPNHIPYDFPYPFGFSAGCAIRLDCNHDGAATIGEFPVQLINSDHIKVVIKAKCNRRLHTIRQFFSPHYAPTANNAILLQNCSSPISTCLLPTTMVQTKFESPDCSVNRTSISCYTQNNTASAAFLDFKNLTGTNCDYLLSSISAEALNSNTSAGISLEIQTVDLGWWLQGPCRQSCHKDANCTELISPSDGKLSHRCRCREGLVGDGYLTGTGCRKASNCYATKYTLAQCGTSTTATRTAVLVGTIIAGAFLLVTLLLFCCFIRRRSNLKSIHLNKITKRRLAEATTDAGVSTIHLYTYKEILKATHNFSEDYRLGTGAYASVYVGKLRGEWVAIKRLKNRDPDTIQQVLNEINLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLFQHLQKQRGTGLPWLVRLNIAVETANAIAHLHSAINHPIFHRDIKSSNILLDHNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFCRPKDEVNLAGLAVDRIGNGQLRVIVDPLMEMELDEWGSSSVEKVGEVAFRCLAFNRDVRPSMVEVAAELEEIRRSRWDKGGVKCKEIVESGSWKSSHGGGDYFSRGSVQDSWQSEPSSPSSNSLLNNIPL 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 911920 914485 + CmaCh05G002160.1 Cma05g00216 294334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00216 678 MobiDBLite consensus disorder prediction 654 678 - -
Cma05g00216 678 Pfam Protein kinase domain 348 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00216 678 Gene3D Phosphorylase Kinase; domain 1 316 420 - -
Cma05g00216 678 Gene3D Laminin 210 247 - -
Cma05g00216 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Cma05g00216 678 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 635 IPR045274 GO:0007166
Cma05g00216 678 SMART serkin_6 346 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00216 678 Gene3D Transferase(Phosphotransferase) domain 1 421 635 - -
Cma05g00216 678 ProSitePatterns Protein kinases ATP-binding region signature. 352 373 IPR017441 GO:0005524
Cma05g00216 678 ProSiteProfiles Protein kinase domain profile. 346 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00216 678 SUPERFAMILY Protein kinase-like (PK-like) 328 618 IPR011009 -
Cma05g00216 678 MobiDBLite consensus disorder prediction 640 678 - -
Cma05g00216 678 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 27 635 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00216 - - - csv:101218893 1111.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00216 Cma12g00502 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00216 Cma-Chr5:911920 Cma01g00400 Cma-Chr1:2027839 6.96E-93 dispersed
Cma08g00161 Cma-Chr8:881126 Cma05g00216 Cma-Chr5:911920 8.65E-53 dispersed
Cma12g00503 Cma-Chr12:2605230 Cma05g00216 Cma-Chr5:911920 1.13E-133 transposed
Cma12g00502 Cma-Chr12:2602510 Cma05g00216 Cma-Chr5:911920 0 wgd
Cma03g01017 Cma-Chr3:7079778 Cma05g00216 Cma-Chr5:911920 8.24E-173 wgd
Cma05g00216 Cma-Chr5:911920 Cma07g00735 Cma-Chr7:3250356 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g862 . . . . . . . . Cmo05g00222 Cmo12g00445 . . . Car12g00472 . . Cpe07g00450 Bhi04g00293 . . . . . Lcy13g2018 Cla08g01525 . . . . . . Cone4ag1879 Cone7ag1788 Cone17ag1312 . . . . Cme03g01991 . Blo18g00827 . Bda01g01485 Bpe02g01680 . Bma01g00774 . . . . Cma12g00502 Cma05g00216 Car05g00176 . Cpe11g00178 . . . . . . . . . . . . . . . Lsi08g01427 Csa02g02013 Chy03g01496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001068 3 4 2 2 3 2 4 2 2 2 2 2 4 2 1 4 2 6 4 2 2 2 1 2 1 2 2 2 2 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68571 PF00069 Pkinase 4.30E-40 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00216 Cma_Chr05 FPKM 6.876395 7.295372 1.335706 1.363591 1.102655 0.485523 0.851328 0.183527 0.103891 0.218597