Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00218 ATGGGTTGGTTAAGCAAAATTTTGAAAGTTGGATCTGGAGATAAAATAACTGGAAGGAATTACCAAACCGAGCTCCAGGAGGATCCAAATTCTCGTCTGCCCTCGACTTCGGAGGGATTATGGTCCGAAAACGAGAATGAAGACATCGATCATGCAATAGCACTTTCTCTTGTAGAAGAGAGTCAGAAGGCAAATAATGTGATTGATCGTGATTATCAATTGGAAGAAGATGAACTGCTAGCCAAAGCATTACAAGAAAGCCTCAACTTTGAGCCTCCTCCACAATATACAAGCGGAAATGCGTATCAACCTTATCTACCTCAATATCAAGTTGGTTCCAGGAAATGTGCTGGCTGCTATAATGAGATTCGCCATGGACGTTACTTGAGCTGCCTGAATTCATTTTGGCATCCAGAATGTTTCCGTTGTCGTGCTTGCAACCTCCCGATATCAGACTATGAGTTTTATACTTCTGGGAATTTTCCTCATCATAAATCTTGCTACAAGGAGAGTTATCACCCAAAATGTGATGTTTGCAAGCACTTTATTCCAACAAATCCTACTGGTCTTATTGAATATAGGGCACACCCTTTCTGGATACAGAAATACTGCCCGTCTCACGAATATGATGCCACTCCCCGATGTTGCAGTTGTGAACGAATGGAGCCACGAGACGTTAAGTATATTCCACTTCATGATGGTCGAAAGCTTTGCCTCGAGTGTCTCGACTCTACAATCATGGACACAAATGAATGTCAACCTCTCTATTGCGATATACAAGCATTTTATGATAGTTTGAATATGAAAGTAGAGCAGGAAGTTCCGTTGCTTTTGGTCGAAAGGCAAGCACTAAACGAAGCGAGAGAAGGCGAAAAACATGGTCATTATCATATCCCCGAGACAAGAGGACTGTGTCTTTCAGAGGAACAAACCATCAGCACTGTTCTAAGGCGGCCTAGATATGAAAGGGGAAATCGAGCAACAAGCACGATGTCAGAGCCCTACAAATTAACACGCCATTGTGAGGTCACTGCAATTCTGATCCTGTTTGGTCTTCCTAGGTTGCTTACCGGGTCGATTTTAGCTCACGAGATGATGCACGCATGGCTACGTCTTAAAGGTTTTCGAACTCTGAGTCAAGACGTGGAAGAAGGTATCTGTCAAGTTCTAGCACACATGTGGCTGAGTAGCGAGCTCACGTCTAGCCAAGCTTACAACAATGTCGCCTCGACCTCGTACTCGGCTGCTCGAAAAATAATGTCTAAATTTGAGAGAAAACTTGGGGAGTTGTTTAAACATCAGATAGAGTCAGACATGTCCCCAGTGTATGGAGATGGATTCAGGGCTGGGCAGATGGCTGTGAACAAATACGGTCTTCGGAGTACTCTGGATCATATTCAAATGACTGGAACCTTTCCTCATTGA 1425 43.58 MGWLSKILKVGSGDKITGRNYQTELQEDPNSRLPSTSEGLWSENENEDIDHAIALSLVEESQKANNVIDRDYQLEEDELLAKALQESLNFEPPPQYTSGNAYQPYLPQYQVGSRKCAGCYNEIRHGRYLSCLNSFWHPECFRCRACNLPISDYEFYTSGNFPHHKSCYKESYHPKCDVCKHFIPTNPTGLIEYRAHPFWIQKYCPSHEYDATPRCCSCERMEPRDVKYIPLHDGRKLCLECLDSTIMDTNECQPLYCDIQAFYDSLNMKVEQEVPLLLVERQALNEAREGEKHGHYHIPETRGLCLSEEQTISTVLRRPRYERGNRATSTMSEPYKLTRHCEVTAILILFGLPRLLTGSILAHEMMHAWLRLKGFRTLSQDVEEGICQVLAHMWLSSELTSSQAYNNVASTSYSAARKIMSKFERKLGELFKHQIESDMSPVYGDGFRAGQMAVNKYGLRSTLDHIQMTGTFPH 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 921801 925589 + CmaCh05G002180.1 Cma05g00218 294336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00218 474 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 142 197 - -
Cma05g00218 474 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 109 141 - -
Cma05g00218 474 SMART uim 75 94 IPR003903 -
Cma05g00218 474 SMART uim 44 63 IPR003903 -
Cma05g00218 474 Pfam LIM domain 116 160 IPR001781 -
Cma05g00218 474 Gene3D Cysteine Rich Protein 106 173 - -
Cma05g00218 474 CDD LIM_DA1 116 168 - -
Cma05g00218 474 SMART lim_4 115 167 IPR001781 -
Cma05g00218 474 Pfam Protein DA1 266 469 IPR022087 -
Cma05g00218 474 PANTHER PROTEIN DA1-LIKE 1 473 - -
Cma05g00218 474 ProSitePatterns LIM zinc-binding domain signature. 116 150 IPR001781 -
Cma05g00218 474 ProSiteProfiles LIM domain profile. 114 174 IPR001781 -
Cma05g00218 474 PANTHER PROTEIN DA1-RELATED 2 1 473 IPR045218 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00218 - - - csv:101221261 901.353
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00218 Cma12g00498 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00218 Cma-Chr5:921801 Cma20g01153 Cma-Chr20:9114577 0 dispersed
Cma12g00498 Cma-Chr12:2584714 Cma05g00218 Cma-Chr5:921801 0 wgd
Cma03g01028 Cma-Chr3:7160461 Cma05g00218 Cma-Chr5:921801 2.70E-92 wgd
Cma05g00218 Cma-Chr5:921801 Cma07g00747 Cma-Chr7:3316436 2.58E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g879 . . . . . . . . Cmo05g00224 Cmo12g00443 . . . Car12g00468 . . Cpe07g00446 Bhi04g00285 . . . . . . Cla08g01521 Cam08g2012 Cec08g1588 Cco08g1723 Clacu08g1701 . Cre08g1483 Cone4ag1886 Cone7ag1797 Cone17ag1316 Cone20ag0158 . . . Cme03g01987 Blo17g00819 . Bda08g01302 . . Bpe05g00075 . Bma05g00105 . . . Cma12g00498 Cma05g00218 Car05g00178 . Cpe11g00180 . . . . . . . . . . . . . . . Lsi08g01424 Csa02g02018 Chy03g01493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35031 PF12315 DA1-like 3.50E-92 CL0126 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00218 Cma_Chr05 FPKM 12.802203 14.345838 6.522988 6.220861 2.972796 2.41036 2.778072 5.507684 6.438941 6.625226