Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g00219 | ATGTTCGAACCACCACCACCACCCCCGCCGCTGCCCTCACTTCTCTTCCTTTTCTTCTTCTTCCTCTTCATTTCATCCATAACCGCCGCCGATGCCATTGCTGTATTCAAGGAGGCCCCCCAATTCTATAACTCCCCGGACTGCCCCTTGGTCGTCACTGGCGAGGAAGACGGTAACCGACTTTGCTCATACGACGGAATCCACGTGGCGATGACATTGGACACCGCATACATCCGAGGGTCCATGGCGGCCGTCCTCTCCGTTCTGCAACATTCCACCTGCCCCCAAAATGTAATATTCCATTTCGTTTCCTCCGCCTCTGCAAACGCGTCGGATCTACGCGCCACTATTTCCTCCTCCTTCCCATACCTGAAATTCCAAATCTACCCGTTCGACGACGACGCCGTGTCTCGTCTGATCTCCACCTCCATCCGATCGGCTCTGGATTGCCCTTTGAATTACGCGCGTAGTTACTTGGCCGACCTCCTTCCCCTCTGTGTCCGTCGTGTCGTCTATCTCGATTCCGATCTAATCCTCGTCGACGACATCTCCAATCTCGCTAATACCCCTCTAAACGATGCCGTCTTAGCCGCCCCGGAGTACTGCAACGCCAATTTCACCTACTATTTCACTCCCACATTCTGGTCCAATCCCTCTCTGTCTCTCACCTTCGCCAATCGCAACCCCTGTTATTTCAACACCGGCGTCATGGTCATCGACCTCGCCCGGTGGCGCCTCGGCGATTTCACCGCAAAAATCGAGGAATGGATGGAGCTTCAGAAGCGGATAAGGATCTACGAGCTGGGATCTCTGCCGCCATTCATGCTCGTTTTCGCCGGTAACATTGCCCCCGTGGACCACCGCTGGAACCAGCACGGTCTCGGCGGTGACAATTTCAGAGGACTCTGCCGGGATCTACACCCCGGTCCAGTGAGCCTACTGCATTGGAGTGGAAAGGGGAAGCCGTGGGCCCGGCTCGATGCGAACCGGCCGTGTCCATTGGATGCTTTGTGGGTCCCTTACGATCTGTTGCAAACTCCATTTTCGTTGGAGTCTTGA | 1059 | 55.43 | MFEPPPPPPPLPSLLFLFFFFLFISSITAADAIAVFKEAPQFYNSPDCPLVVTGEEDGNRLCSYDGIHVAMTLDTAYIRGSMAAVLSVLQHSTCPQNVIFHFVSSASANASDLRATISSSFPYLKFQIYPFDDDAVSRLISTSIRSALDCPLNYARSYLADLLPLCVRRVVYLDSDLILVDDISNLANTPLNDAVLAAPEYCNANFTYYFTPTFWSNPSLSLTFANRNPCYFNTGVMVIDLARWRLGDFTAKIEEWMELQKRIRIYELGSLPPFMLVFAGNIAPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWVPYDLLQTPFSLES | 352 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 926435 | 927493 | - | CmaCh05G002190.1 | Cma05g00219 | 294337 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g00219 | 352 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 67 | 343 | IPR029044 | - | |
| Cma05g00219 | 352 | Pfam | Glycosyl transferase family 8 | 68 | 325 | IPR002495 | GO:0016757 | |
| Cma05g00219 | 352 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 68 | 332 | IPR029044 | - | |
| Cma05g00219 | 352 | PANTHER | GALACTURONOSYLTRANSFERASE-LIKE 1-RELATED | 16 | 352 | - | - | |
| Cma05g00219 | 352 | PANTHER | GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN | 16 | 352 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma01g01887 | Cma05g00219 | CCT | |
| Cma05g00219 | Cma09g00176 | CCT | |
| Cma01g01887 | Cma05g00219 | ECH | |
| Cma05g00219 | Cma09g00176 | ECH | |
| Cma05g00219 | Cma12g00497 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g00219 | Cma-Chr5:926435 | Cma08g00450 | Cma-Chr8:2531399 | 5.20E-137 | dispersed | |
| Cma17g01154 | Cma-Chr17:8021388 | Cma05g00219 | Cma-Chr5:926435 | 2.00E-140 | dispersed | |
| Cma01g01887 | Cma-Chr1:12360780 | Cma05g00219 | Cma-Chr5:926435 | 3.19E-136 | wgd | |
| Cma12g00497 | Cma-Chr12:2578149 | Cma05g00219 | Cma-Chr5:926435 | 0 | wgd | |
| Cma03g01030 | Cma-Chr3:7170241 | Cma05g00219 | Cma-Chr5:926435 | 0 | wgd | |
| Cma05g00219 | Cma-Chr5:926435 | Cma07g00751 | Cma-Chr7:3335630 | 0 | wgd | |
| Cma05g00219 | Cma-Chr5:926435 | Cma09g00176 | Cma-Chr9:749396 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g00219 | K20893 | - | csv:101218422 | 624.78 |