Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00220 ATGATTTGTTCTTTGATCGATATCGGAACGCAGGTAGGGTGTGCAGATATGTCGAGAGGGTTTGGGGAATCGACAAGTAGGCAACCCCAAGGCCCTTCTTATTCCGATAACAATGGTGATGCTAGTAATTTTGAATGCAATATTTGCCTGGATTTAGCTCAGGATCCTATTGTAACCCTATGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTCTCATAGAAGAACAAAAATTGGTTCCCTTGTATGGTAGGGGAAAGACATCGACTGACCCGAGATCGAAAAGTATTCCTGGAATCAATATTCCTAATCGTCCTGCTGGACAGAGACCTGAAGCAGCAGGCCCTCCCCCAGAACCAAATCCTTTTCCCCACAATGGGTTCGGATTCATGGGAGGTCTTGGCGGGTTTGCCCCAATGGCATCGACGAGGTTTGGCAATTTCACTTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACGTTCCATATGGTTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGCTACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGCTTTTGTTTATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAATAG 741 46.29 MICSLIDIGTQVGCADMSRGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANVPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 929144 931380 - CmaCh05G002200.1 Cma05g00220 294338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00220 246 MobiDBLite consensus disorder prediction 100 138 - -
Cma05g00220 246 SUPERFAMILY RING/U-box 42 99 - -
Cma05g00220 246 PANTHER OS12G0636000 PROTEIN 19 246 - -
Cma05g00220 246 CDD RING-HC_AtRMA_like 44 88 - -
Cma05g00220 246 SMART ring_2 46 86 IPR001841 -
Cma05g00220 246 ProSiteProfiles Zinc finger RING-type profile. 46 87 IPR001841 -
Cma05g00220 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 246 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cma05g00220 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Cma05g00220 246 Pfam Zinc finger, C3HC4 type (RING finger) 45 86 - -
Cma05g00220 246 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00220 Cma-Chr5:929144 Cma12g00497 Cma-Chr12:2578149 3.22E-110 dispersed
Cma13g00649 Cma-Chr13:6121069 Cma05g00220 Cma-Chr5:929144 2.90E-27 dispersed
Cma20g00196 Cma-Chr20:927193 Cma05g00220 Cma-Chr5:929144 6.03E-27 dispersed
Cma03g01031 Cma-Chr3:7174462 Cma05g00220 Cma-Chr5:929144 6.40E-78 wgd
Cma05g00220 Cma-Chr5:929144 Cma07g00752 Cma-Chr7:3339684 5.16E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00220 K10666 - csv:101221027 410.994