Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00223 ATGGAGGAGACGATACGGTGTTGTTGTCTATGTACTGCTCGTAAATTTGATGCTAAGATCCGCTTCGCCGTTGTTCTTTTTGAGATTTTGCTTCTTCTGGCTTTGGATGTTACATATGCTAAATCTGAAGATCATCAGCTGGAAAGGGGAGCTGAAAGCATTGTTTCACACTCCTGCATCCATGATCAGATACTCGAGCAAAAAAGGCGACCCGGGCTCAAGGTGTACTCGGTTTCCCCTCAAGTTTACGATGCTTCTGGCACGGCAAAACCCCTTCATAGAAGAGGTAGAGCATTGCTTGGAGTTTCAGAATTATCAGATCAGCAAAAAAATGTAAAACAACCTATCAGAATATATCTGAATTATGATGCTGTTGGTCACTCTCCTGATAGAGATTGTCAAAAAGTTGGTGACATTGTGAAGCTTGGAGAGCCTCCTGCCACTAGTTCCTTTCTAGGCTCGCCTTCTTGCAATCCTGACAGCAATCCTCCGATTACGGGCGACTGCTGGTATAATTGCACTTTAGACGATATCTCTGGGGAGGACAAAAGGCATCGCCTGTACATGGCTCTAGGACAGACAGCAGATTGGTTTAGAAGAGCATTGGCCGTTGAGCCTGTGAAAGGGAACTTGCGTCTAAGTGGATACTCGGCTTGTGGACAGGATGGAGGCGTGCAACTTCCACGTGAATACGTCGAAGAGGGTATTCCCAATGCAGACTTGGTTCTTTTAGTGACCACAAGGCCTACCACTGGGAACACACTTGCTTGGGCTGTTGCATGCGAACGTGATCAATGGGGCCGTGCAATTGCAGGACATGTGAACGTTGCACCTCGGCATTTGACTGCCAAAGCGGAAACCTTACTTTCAGCTACTCTTATACACGAGGTTATGCATGTCCTTGGTTTTGATCCACACGCCTTTGCCCATTTTAGAGATGAGAGGAAAAGAAGGCGTTGTAAGGTAACAGAACAGGTCTTGGATGAAAGACTTGGGCGCACCGTGACTCGTGTGGTGCTTCCACGTGTAGTTATGCATTCAAGATATCATTATGGAGCTTTTTCAAAGAATTTTATGGGTTTAGAGCTTGAAGACGGAGGAGGGCGTGGCACTTCAGGATCTCACTGGGAGAAAAGGCTTCTGATGAATGAAATTATGACGGGTTCAGTTGATACAAGATCTGTAGTCTCAAAAATGACTCTGGCTTTATTGGAAGACAGTGGATGGTACCAGGCCAACTATAGTATGGCTGATCGTCTCGATTGGGGCCGCAACCAGGGAAATGATTTTGTCATGTCCCCCTGCAATCTATGGAAGGGGGCATACCATTGCAACACGACACAGTTGTCAGGATGTACATATAATAGGGAGGCAGAGGGTTACTGCCCGATTGTTAGCTATAATGGCGACCTCCCTCACTGGGCTCGATATTTTCCCCAACCTAACAAGGGTGGACAATCGTCATTGGCCGATTATTGTACTTACTTTGTGGCTTACTCGGATGGATCGTGCACTGACACCAACAGTGCACGGGCACCAGACAGAATGTTAGGTGAAGTACGAGGAAGTAATTCAAGGTGTATGGCCTCATCCCTAGTCAGGACTGGGTTTGTAAGAGGTTCTATGACCCAAGGAAACGGCTGTTATCAGCATCGGTGCATTAACAATTCATTAGAGGTGGCTGTTGATGGTATGTGGAAAGTATGTCCTGAAGCTGGTGGACTGGTTCAGTTCCCTGGCTTTAATGGTGAATTACTCTGCCCTGCATATCATGAACTTTGTAGCAAAGACTCGGTTTCGGTGCCGGGAAAGTGCCCAAATACTTGCAATTTCAATGGAGATTGCGTGGATGGGAAGTGTTTTTGTTTTCTTGGCTATCATGGACATGATTGTAGCAAACGATCTTGTCCTAACAATTGTAGTGGTCATGGGAGGTGTCTTTCTAATGGACTTTGTGAATGTGGAAATGGTTACACCGGCATCGACTGCTCCACCGCTATTTGCGATGAGCAATGTAGCCTCCATGGAGGTGTCTGTGATAATGGTGTTTGCGAGTTTCGTTGTTCGGATTATGCTGGCTATTCGTGCCAGAACAGCTCCAGGCTTCTTTCGAGTCTCTCTGTTTGTAAAAATGTATTGCAAAGGGATATGACTGGCCAACATTGTGCACCCAGTGAACTGAGTATACTACAGCAGCTCGAGGAAGTTGTTGTCATGCCAAATTACCACCGTTTGTTTCCCGGTGGTGCCCGGAAACTTTTTAACATCTTCGGTGGTAGCTACTGCGACGCAGCTGCAAAACAGTTGGCTTGCTGGATTTCAATACAAAAGTGTGACAAAGATGGCGACAATAGACTCCGAGTATGCCATTCGGCTTGTCAGTCATACAATCTAGCATGTGGGGCATCACTCGACTGCTCCGACCAGACCCTTTTCAACAGTGAGGAGGAAGGCGAAGGGCAGTGCACAGGGTCCGGTGAGATCAAACTGTCGTGGTTTAATCGACTGCGCAGTAACTTATTCGTAATTAACAGCTCTTCAAAAGGAAGAGTTGGGGAAGCAAATGCCCCCTTAGATTTAGATTTTCAGTTGTGGTCAGCCCAAAATGATTTGAGAAAAGAATTGGGTTGA 2631 46.45 MEETIRCCCLCTARKFDAKIRFAVVLFEILLLLALDVTYAKSEDHQLERGAESIVSHSCIHDQILEQKRRPGLKVYSVSPQVYDASGTAKPLHRRGRALLGVSELSDQQKNVKQPIRIYLNYDAVGHSPDRDCQKVGDIVKLGEPPATSSFLGSPSCNPDSNPPITGDCWYNCTLDDISGEDKRHRLYMALGQTADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPREYVEEGIPNADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAKAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRCKVTEQVLDERLGRTVTRVVLPRVVMHSRYHYGAFSKNFMGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYQANYSMADRLDWGRNQGNDFVMSPCNLWKGAYHCNTTQLSGCTYNREAEGYCPIVSYNGDLPHWARYFPQPNKGGQSSLADYCTYFVAYSDGSCTDTNSARAPDRMLGEVRGSNSRCMASSLVRTGFVRGSMTQGNGCYQHRCINNSLEVAVDGMWKVCPEAGGLVQFPGFNGELLCPAYHELCSKDSVSVPGKCPNTCNFNGDCVDGKCFCFLGYHGHDCSKRSCPNNCSGHGRCLSNGLCECGNGYTGIDCSTAICDEQCSLHGGVCDNGVCEFRCSDYAGYSCQNSSRLLSSLSVCKNVLQRDMTGQHCAPSELSILQQLEEVVVMPNYHRLFPGGARKLFNIFGGSYCDAAAKQLACWISIQKCDKDGDNRLRVCHSACQSYNLACGASLDCSDQTLFNSEEEGEGQCTGSGEIKLSWFNRLRSNLFVINSSSKGRVGEANAPLDLDFQLWSAQNDLRKELG 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 938906 944133 - CmaCh05G002230.1 Cma05g00223 294341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00223 876 Pfam Leishmanolysin 171 596 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Cma05g00223 876 ProSitePatterns EGF-like domain signature 1. 652 663 IPR000742 -
Cma05g00223 876 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 111 599 - -
Cma05g00223 876 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 2 829 - -
Cma05g00223 876 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 2 829 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Cma05g00223 876 Gene3D Leishmanolysin domain 4 499 594 - -
Cma05g00223 876 ProSiteProfiles EGF-like domain profile. 632 664 IPR000742 -
Cma05g00223 876 Gene3D Leishmanolysin domain 3 439 497 - -
Cma05g00223 876 Gene3D - 109 300 - -
Cma05g00223 876 SMART egf_5 593 632 IPR000742 -
Cma05g00223 876 SMART egf_5 635 664 IPR000742 -
Cma05g00223 876 Pfam EGF-like domain 636 663 IPR013111 -
Cma05g00223 876 ProSitePatterns EGF-like domain signature 2. 652 663 IPR000742 -
Cma05g00223 876 Gene3D Leishmanolysin , domain 2 310 435 - -
Cma05g00223 876 Gene3D Laminin 604 633 - -
Cma05g00223 876 Gene3D Laminin 635 666 - -
Cma05g00223 876 PRINTS Leishmanolysin (M8) metalloprotease family signature 398 427 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Cma05g00223 876 PRINTS Leishmanolysin (M8) metalloprotease family signature 245 274 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00223 K01404 GP63; leishmanolysin [EC:3.4.24.36] - csv:101217702 1692.17
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00223 Cma12g00495 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00495 Cma-Chr12:2566578 Cma05g00223 Cma-Chr5:938906 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g890 . . Bda01g00546 Bda03g00251 Bpe02g00405 Bpe04g00204 . Bma01g02303 Cmo05g00229 Cmo12g00440 . . . Car12g00464 Sed11g1006 . Cpe07g00442 Bhi04g00277 Tan02g1927 Cmetu03g1599 . Hepe10g0673 . Lcy13g2009 Cla08g01515 Cam08g2005 Cec08g1581 Cco08g1716 Clacu08g1694 . Cre08g1477 Cone4ag1890 Cone7ag1801 . . . . . Cme03g01980 . . . . . . . . . . . Cma12g00495 Cma05g00223 Car05g00185 . Cpe11g00184 . . . . . . . . . . . . . . . Lsi08g01418 Csa02g02025 Chy03g01485 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004346 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00223 Cma_Chr05 FPKM 27.719021 27.491438 22.325336 21.412964 33.896885 36.617184 34.06842 13.559101 12.783518 12.396863