Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00226 ATGACCTCCGACGGCGCCACTTCTGCCACCACTTGCCGGCGGAAGCCGTCCTGGAGGGAGCGGGAGAATAATCGGACCAGAGAACGACGAAGGAGAGCCATCGCGGCTAAGATCTACGCTGGCCTTAGGGCTCAAGGCAACTTCAATTTGCCTAAACATTGTGACAATAACGAGGTCCTTAAAGCCCTCTGTGCTGATGCTGGTTGGACCGTCGAAGACGACGGAACCACTTATCGGAAGGGATGCAGGCCGCCCCCAATCGATATCGTCGGCAGTTCCAACAGAGCCACCCCCTACACATCCCAAAATCCAAGCCCATTGTCTTCTTCATTTCCTAGTCCTATGGCATCCTATCAAGTCAGTCCCTCCTCCTCCTCCTTCCCGAGCCCGTCCCGTTTGGACGCCAACCATCCATCAAACCTCATTCCATATCTTCGCCAAGCGATTCCCAAATCACTTCCTGGTCTTAGAATCTCAAACAGTGCTCCCGTGACGCCTCCTCTTTCATCCCCTGCCTCAAATTGGGAGGTCACGGCTAAAGAATCCTTGTCCTTGTTGAATTACCCTTTCTTTGCAGTATCCGCCCCAGCTAGCCCGACACGCCCTCAGCTGCTGCATACTCCCGCCACGATCCACGAATGCGATGAGTCTGAATCATCCACCAATGACTCCAATCAATGGGCACTTCTCCGTGCCTGTGCGCCAACTTCTCCCACCTTCAACCTTATGAAACCTGCTGATCAGCATGCTCTGCACGGTGGTTTCATCAAAGAAAATGGAAGAGGAAAAGAATTTGAGTTCTTGGGCTGCAAGGTTAAGCCCTGGGAAGGGGAGAAGATCCATGAAGTTGGATTGGAGGATTTAGAGCTCACACTCGGTAGCTGTAAGGCTCAAAATGATAACAATAAACAAAATCAGAATCCCCCAAACGACGTCGTTGGATACTCATCTCTCAAATTAATCTCCAATCTCCGGTCAATTTGGGGGAAACAGAAACTTCCCGCCGCTAGCACCGCCATGGCTTCCAAAGCTCCCCCCTCCTCTACCGAGAAACAAAGAGACTTCTTCAATCACCTCGAAGCTTACCTCGCAAAGAGAGACGGCGTCGACAAGCTCTTGAAAATCTCCAGGTACGCCACCAAGATCATCCTCTCCTCCTCCGCTCTTCCCGAATCCCTTCCTCTAACGCACCGTCTCAAGAGCTTCGAATCCAGCGTCGGCGTCAGCCGCAAGGCCTTCCGTCTCGGAAAATTCATCCAAGACCTAAACGCCTTGAGAAATTCGCATTTCGAATCTAGCCAACAACTTCTGCTCGCTCTCGTTGCCTATGGCGGAGAGGGATTTTATTACTTTATCGAACAGTTCATTTGGTTGGCTAAATCTGGTTTAATTGACAAACGGCACTCGAATCACTTGCAGAAGATCAGCGCGTGGGCGGAATTAATCGGCTATATCGGGAGTATTTCGTTGAAATTTAGGGATTTGAAACGGATTCTTGAAGACGAGGCGTGTTTGAAAGCGAGTATTGAGATTGCAGTTACCAGAGGGGATAAACATCGAGAAGAGGAAGAGAAGATGAAGAAATTGCAAACGAAAAAGCTGATGAAGAAGCTTTCGATTGTTCAAGATTTTGCCGATGGATTCATGGCGGCGGCGGACATTCGCGATGGGAATGGCCGGCTTTCAGGTCCTCATCTAATTTCTTGGGCTGGGCTTATCTCGGCATTGATTAGCACTCATAAGAACTGGATATCATGCTGA 1761 50.03 MTSDGATSATTCRRKPSWRERENNRTRERRRRAIAAKIYAGLRAQGNFNLPKHCDNNEVLKALCADAGWTVEDDGTTYRKGCRPPPIDIVGSSNRATPYTSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSRLDANHPSNLIPYLRQAIPKSLPGLRISNSAPVTPPLSSPASNWEVTAKESLSLLNYPFFAVSAPASPTRPQLLHTPATIHECDESESSTNDSNQWALLRACAPTSPTFNLMKPADQHALHGGFIKENGRGKEFEFLGCKVKPWEGEKIHEVGLEDLELTLGSCKAQNDNNKQNQNPPNDVVGYSSLKLISNLRSIWGKQKLPAASTAMASKAPPSSTEKQRDFFNHLEAYLAKRDGVDKLLKISRYATKIILSSSALPESLPLTHRLKSFESSVGVSRKAFRLGKFIQDLNALRNSHFESSQQLLLALVAYGGEGFYYFIEQFIWLAKSGLIDKRHSNHLQKISAWAELIGYIGSISLKFRDLKRILEDEACLKASIEIAVTRGDKHREEEEKMKKLQTKKLMKKLSIVQDFADGFMAAADIRDGNGRLSGPHLISWAGLISALISTHKNWISC 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 963953 967163 + CmaCh05G002260.1 Cma05g00226 294344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00226 586 MobiDBLite consensus disorder prediction 14 29 - -
Cma05g00226 586 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 1 298 - -
Cma05g00226 586 Pfam BES1/BZR1 plant transcription factor, N-terminal 13 136 IPR008540 -
Cma05g00226 586 MobiDBLite consensus disorder prediction 93 133 - -
Cma05g00226 586 Pfam Peroxisomal biogenesis factor 11 (PEX11) 357 583 IPR008733 GO:0005779|GO:0016559
Cma05g00226 586 MobiDBLite consensus disorder prediction 1 29 - -
Cma05g00226 586 MobiDBLite consensus disorder prediction 82 133 - -
Cma05g00226 586 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 298 IPR033264 GO:0003700|GO:0006351|GO:0009742
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00226 K14503 BZR1_2; brassinosteroid resistant 1/2 - csv:101219853 471.085
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00226 Cma12g00488 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00226 Cma-Chr5:963953 Cma07g00508 Cma-Chr7:2196728 7.30E-86 dispersed
Cma06g01108 Cma-Chr6:7478953 Cma05g00226 Cma-Chr5:963953 4.08E-07 dispersed
Cma08g00929 Cma-Chr8:5800216 Cma05g00226 Cma-Chr5:963953 1.64E-09 dispersed
Cma12g00489 Cma-Chr12:2541382 Cma05g00226 Cma-Chr5:963953 5.22E-160 transposed
Cma12g00488 Cma-Chr12:2538169 Cma05g00226 Cma-Chr5:963953 6.07E-155 wgd
Cma03g00775 Cma-Chr3:6022602 Cma05g00226 Cma-Chr5:963953 4.53E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g901 . . . . . . . . . Cmo12g00434 . . . Car12g00459 Sed02g1607 . Cpe07g00437 Bhi04g00270 Tan02g1939 Cmetu06g0284 . Hepe10g0662 . Lcy13g2003 Cla08g01509 Cam08g1998 Cec08g1573 Cco08g1710 Clacu08g1688 . Cre08g1471 . . . . . . . Cme03g01974 Blo17g00812 . Bda08g01296 . . . . . . . . Cma12g00488 Cma05g00226 Car05g00188 . . . . . . . . . . . . . . . . . Lsi08g01413 . Chy03g01480 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00489 . 25 330 BZR Transcription Factor Family AT1G75080 59.2 2.1e-81 300.1
Cma03g00775 CST 632 922 BZR Transcription Factor Family AT1G75080 58.4 1.6e-78 290.4
Cma07g00508 CST 33 323 BZR Transcription Factor Family AT1G75080 58.3 3.6e-78 289.3
Cma05g00226 CST 33 298 BZR Transcription Factor Family AT1G75080 61.6 4.8e-78 288.9
Cma12g00489 . 25 330 BZR Transcription Factor Family AT1G19350 57.0 3.6e-78 289.3
Cma03g00775 CST 632 921 BZR Transcription Factor Family AT1G19350 59.2 4.7e-78 288.9
Cma07g00508 CST 33 321 BZR Transcription Factor Family AT1G19350 59.3 1.4e-77 287.3
Cma05g00226 CST 33 299 BZR Transcription Factor Family AT1G19350 60.3 3.1e-77 286.2
Cma03g00775 CST 611 917 BZR Transcription Factor Family AT3G50750 57.9 2.1e-76 283.1
Cma07g00508 CST 10 323 BZR Transcription Factor Family AT3G50750 56.6 2.8e-76 282.7
Cma05g00226 CST 1 293 BZR Transcription Factor Family AT3G50750 50.5 6.5e-57 218.4
Cma04g00664 CST 77 326 BZR Transcription Factor Family AT4G18890 54.2 2.2e-49 193.0
Cma18g00433 CST 80 326 BZR Transcription Factor Family AT4G18890 51.2 1.4e-48 190.3
Cma16g00431 . 77 325 BZR Transcription Factor Family AT4G18890 52.6 9.2e-48 187.6
Cma04g00664 CST 1 326 BZR Transcription Factor Family AT1G78700 72.2 1.3e-117 420.2
Cma16g00431 . 1 325 BZR Transcription Factor Family AT1G78700 71.0 1.3e-112 403.7
Cma18g00433 CST 1 326 BZR Transcription Factor Family AT1G78700 69.2 4.1e-103 372.1
Cma13g00580 CST 1 342 BZR Transcription Factor Family AT1G78700 65.2 2.0e-102 369.8
Cma03g00775 CST 632 804 BZR Transcription Factor Family AT4G36780 78.5 1.2e-63 240.7
Cma07g00508 CST 33 204 BZR Transcription Factor Family AT4G36780 75.7 2.7e-60 229.6
Cma05g00226 CST 33 197 BZR Transcription Factor Family AT4G36780 56.5 7.2e-37 151.8
Cma12g00489 . 57 228 BZR Transcription Factor Family AT4G36780 56.2 1.6e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004435 1 1 1 1 1 2 2 2 2 1 1 2 2 1 1 2 2 1 2 2 1 1 1 1 1 1 1 2 1 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35032 PF05648 PEX11 1.80E-44 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00226 Cma_Chr05 FPKM 3.400658 3.933463 11.696493 10.434865 11.649298 11.850595 11.082725 11.915931 11.109153 10.243555