Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00232 ATGGCCGGCCGCTTCGACTTTGGCTCTCGCCCCAATCTCTCTGTCTCCAGTCCTCTCCATGCTGCCAATGATGTTCAGGGGTCTGAAAATCCAATTCCTCTTTCACCACAGTGGCTTCTGCCTAAACCAGGGGAGAGTAAGCATGGAATGGGAACCGGGGAAAACCATTTCAGTCATCAACCTGTTTATGGAAACCGCATGGACACGATGAAGGGATCAGAGAATTCTGAGGATATGAATGAAATACAAAAGAAAAAAGAAATTTTTAGGCCATCCTTGACTGATTCTGAAATTGGTAGGCGTGACCGTTGGCATGACGAGGAAAGAGAAAATAGTTCTTCAGTGCGTAAGGATCGTTGGAGGGATGGTGAGAAAGAGATAGGTGATGGTCGTAAGATGGATCGTTGGAATGAAGACTCATCCACAAGAGTCTTTAGAGAATCTCGCCGAGGCCCATCGGAACGCTGGTCTGATTCAAGCAATCGGGATAATGTTCATTATGATCAACGACGTGAGAGCAAATGGAACACACGTTGGGGCCCTGATGATAAGGAAACTGAAGGATTTCGTGAGAAGCGGGTGGACTCTGGAAGAGATGGTGATTTGCACCTTGACAAAAATTTCTCGCATGTGTCCAATTATGGGAAAAATGACAGGGATGGAGATCATTATCGCCCATGGAGGTCTAGTTCCTCTCAGGGTCGAGGTAAGGGAGAACCTCCTCATCATCAAACCCAAACTCCAATCAAACAAGTTCCTGCATTTTCCCATCGTGGACGTGCAGACAACACACCTCCTACCTTCTCTTTAGGTCGTGGAATCATCAGTTCTGGTGTAAATCCTCCCAATAGTATTTATTCATCTCCACATTCTCTTGGAGCTTCCTCCGAGAAATCTGGAAGAGAGCCTTACTACTACAAATATAGCAGGACAAAGTTGCTTGATGTTTTCAGGACTACCAGTCTGACATCACAGCAAACTTTAAAAGATGGATTTGTGCCCGTGCCTACTCTTACGCTGGATGAACCGTTGGAGCCTCTTGCTCTTTGTGTGCCAACTACTGAAGAAATGACTTTCTTGAAAGGGATTGATAAAGGGGAAATTGTCAGTAGTGGTGCACCTCAGGTGTCAAAGGATGGTCGAAACTCATCAGAATTTATGCAGACTAGACGAACAAAACTTGGTGTTTCACCTTCCCTAGGCAGTAGAGAGGATTTACCTCATGGCTTTGATGATTGCAATGATGATAAGGATGATAGCACCACTAAACCTGGTCACACAAACTATTCAGAGGTCACTACCGAGAGGCAGTTGCCATATCATAGGCCCCTGGCACATGCTAGTAGCACCTTCAAATCTGAAGCTTTCAGAGAAGATGACAATGCTATGAGAAAAGCAGATGAGGGGCCTGTCAGTAGGGAATCTAGTGTTAAGGGGGGTACCAATGTTCAACACGGCCGTACATGGGATGCCTCATCACTTGAGCAACTCCTGAATACATCCTTACCTGATTGGAGAGACAATCCTAATAATATCAATTCAGGAACTCCTGACAAGGGTCTACAGTCTTCAAAGAATCTTAATGATGGGTGGGGAAGTAACTCAGCAACTCCATCTTATCCGAAGGAGAATCCCAAATGGCATACCGGGGATGAATCCATCCTTAGAAGGCAGCTTTCAGGGATTTTGGACAAGGAACAACTAGCAAGGAAAACTGTTCAATCTGCTCCAGAGGATTTGCAATTCCATTACATTGATCCTTCTGGTGCAATTCAGGGCCCATTTAGTGGGGCTGACATTATTCAGTGGTTTGAGGGTGGGTATTTTGGCTTAGATTTACCTGTCCGTCTGGCAAATGCACCAAATGAGTTGCCATTTTCAGCACTTGGTGATGCCATGCCTCATTTACGATCTAAAGCCAAGCCACCACCAGGATTTTGTGGACCAAAGCAGAATGAATTCGCAGATACATTAGGTAACGCTAGTATTGGTAGCTTGGGAAAGCTTCATACTGGTTTGAATGAGATTGATCCTTTGAGGAATGAGACAAGGCATAAACATGGCTCAACGGTTGAAGCTGAAAACAGATTTCTGGAGTCACTTATGTCTGGTAATATAGGTTCTTCACCTCTCGAGAAGAGTGCCTTTTCTGAAGGCTTGCCAGGGTATTTTGGGAATAATTCTAGTAATTTGCCTTCGTTGGGAATAGACAATGGAAACAACCTTTTCCTGTTGGCCAAAAGAATGGAACTTGAGCGGCAAAGGTCTTTGTCCAATCCTTATGCATTTTGGCCTGGTATAGATGCTTCATCCAAGGTATCTAAGCCAGACATTGGCCTAGATGATCCAATTCAGCAAGCCAAACTTTTATCTTCAATAATAGATCATTCTCGCCAAACTTCTCATCCGCAAAGTGCTGATATGTCGGCCATTCTGCAAGGCTTGTCTGACAAAGCACCTCCTGGCATTAATGACGTTGCTGGCTGGTCAAAATTTGCTTCACAGTGTGCTCCCGATCCTCTCCAAAGTAAACTTGACTTGCACCATGATCTTAACTTGTCTTCGCAGGCACCTTTTGGTTTCCAACAACAGAGATTACAACCACAGCCGCCGTTAACAAATTTGCTTGCTCAAGCTACTGATAATTCTACCTTAACTTCAGATAAGTTTCTTCCTTCCAGCTTATCTCAAGATCCACAACTGATAAGTAAATTGCAACAACAGCACCTGTTGCAGTTGCATTCACAAGTGCCTTTCTCTGCACAACAAATGTCGTTGTTGGACAAAATTTTATTACTTAAGCAGCAGCAAAAACAAGAGGAGCAACAACAGTTATTACAGCAGCAGCAGCAGCAGTTGCTCTCCCAGGTTCTATCAGAGCATCAGTCACATCAGCATTTTGTCGATCCATCTTTTGGACAGTTGCACGGCGCTTCTATACCTATTGGAAATGCATCTAATGATCCATCACAAGTCCAGCTATCACGAGAGAAGTTTCAGATTGGTTCACAAAAGCCCTTAAATGTACTAACTGATCATGCGACTACCTACGGAAATATGGCTCTGCAAGCTACCCAAGGAGCCAGTTACAATGTTAATTCGGAAGATCCGTCCCTTATTCTTCCACCTCAAATGTTTGGAAATGTTGTTCAGCAGAAGAGTTGGACTGCTGCTATCCCCGAGCAGCTTAATGATACTCGTCCAAAAGATGTTATACCTGGATCTAATGTTGTTGAGGGCTCACTTTTGCCTGGGATGTCTAGCAAATCAAATGAGGATGTGAATCTTGTACCGAAGTCATCTGATAGCCACACTATTATTAAAACTTTGGAAAAAATATCGGAGGATGTACCAAGGCTGGATGCAACTGTCACATCTTTTGCATCCGATGATGCTACTGTAGAACCTCTTCCTCTCAAGAATGCTGAAATCTCAGTTGCTATACCACCAGCAGCAGTTCATAATATTGAAATTTCCGTTCCCAACAGTGTACCTGCTGTGAAGGTTCAAGAAGCTATTATGCCTATGGAAAAGCTGGCAAGGGATGGAAGCAGAGATGAAACCTCCTTAGAGGCAGAAGTGAAAAATGTTGAGGTACAAGAACCTAGAAAATCTTCTGATAAAAAGACCAAGAAGCAAAAATCTTCAAAGTTGCTGTCCTCTGACCAGGCCAAGGACTTTAAGAATTCTGGTATTCAGCAGTCAAAGCAATCAAAAAGTGGGAAATCAGAAAATGATTTGAAATTGAAGTCAGATAATATTGTGGGAAAATCAAGTGACACGGCTTGCTCTCCTCGGAAGATCAGAGATGGGGATGGCAAAATTGCCATTGTGGATAGTCAGCTAGATCAAAGCTCTGCCTCTGCTGTAAATTCCTGGAACGATGGTGAAACTGTTCCAGTGAGGGATGAGTCCAGACTAAGTGGGTCTGATTCTGTGCTTAATTCACAAACTCAATCTGGTCAAAGAGCTTGGAAAATTGCTTCGAATTTCAAGCCAAAGTCTTTATTGGAGATTCAGGAGGAAGAGCAGAAAATGGCACATACAGAAACTGTTGTATCAGACATTTCAACTTCTATTAACACTATGAGTTTATCAACTCCTTGGGCTGGAATCGTGAGCAGTTCAGACCCAAAAGCTTCCAGAGAAATTCATAAAGATTCTGTGAATTCAGAATCAAGTGAGAAACATGAAAATTTATTGACTTCAAGAAGTAGAAAGAGCCAATTGCATGATCTGCTGGCGGAAGATGATATGGAAAAGTCTGGTGCAGGTGATGTTCGTGTTTCTGACACTGTTCAGATTGCTTCCTCTCCTCAGGTCATGGCCGTGCGAGCAGAACCTATGGATGAAAATTTTATTGAGGCAAAAGACACAAAAAAGAGCCGCAAGAAGTCTGCTAAGGCTAAGGGTATTGGTACCAAGGCCTCCTCTGCAGTCCCTTCTGCTGATGTGCCTGTTGGTTTAAGTCCCGTTGAGAAGGGGAAAATCTCCCGCCAGATGCAGCAAGAGAAGGAAGCGATGCCCGCCATTCCTTCTGGGCCTTCTTTTGGTGATTTTGTTCTGTGGAAGGGAGAAGTTGCTAATGTGGCCCCTGCTCTAGCATGGTCCAGTGACTCTGGGAAGGTCGCCAAACCCACATCTTTGAGGGATATTCAGATGGAGCAGGAAAGAAAAATCTCTGCTGCTCAGCATCCTCAACAAATCTCTACTCCCCAAAAGGCTCAGCCTACTCAGGTTGGTCGTAGCAGCCGCACTACTACTCCTTCCTGGTCTCTCTCTGCATCTTCCCCATCGAAGGCTGCATCAACCCCCCTTCAGAATATTGCTACTCAGTCAAAACATGGAGGTGATGATGACCTATTTTGGGGCCCCATTGAGTCGAAGCAAGAGAATCAGCGGGTTGATGTACGTCCTGGGAGCCACGGAAACTGGGGAAATAGGAACACCCCTGTAAAAGCAGTAGCTTCAACTGGGTTGTTAAGCCGACAAAAATCATCTGGTGGCAAAGCTGACCATCTTTCGTCCTCGCCTGCACAATCGTCTCAGAAAGGCAAGCAAGATCCAATTACCAAACATTCAGAAGCTATGGGCTTCCGTGATTGGTGTGAGAATGAATGTGTAAGGCTCATTGGGACAAAAGACACGAGTTTCCTGGAATTCTGCTTGAAGCAATCAAGATCTGAGGCAGAGCTGCTTTTGATAGAGAATCTTGGATCATATGATCCCGACCATGAGTTCATCGATCAATTCCTCAATTACAAGGAGTTGCTCCCAGCAGATATTATTGAGATTGCATTCCAAAGTCGGAACGAGAGGAAGGTATCTGCAATGGCTTCCCGAGATGTGAATTCCGGCAATGCTGGTGGGGGGGATCTGGACCCGGACGTGTCTGCTGGCCGAGATGGGTCGGCGAAAAGTGGAGGAGGAAAGAAGAAAGGAAAGAAAGGAAAGAAGATCAATCCATCAGTTTTGGGGTTTAATGTAGTTAGTAACCGAATCATGATGGGTGAGATTCAGACGGTTGAAGACTAG 5535 44.55 MAGRFDFGSRPNLSVSSPLHAANDVQGSENPIPLSPQWLLPKPGESKHGMGTGENHFSHQPVYGNRMDTMKGSENSEDMNEIQKKKEIFRPSLTDSEIGRRDRWHDEERENSSSVRKDRWRDGEKEIGDGRKMDRWNEDSSTRVFRESRRGPSERWSDSSNRDNVHYDQRRESKWNTRWGPDDKETEGFREKRVDSGRDGDLHLDKNFSHVSNYGKNDRDGDHYRPWRSSSSQGRGKGEPPHHQTQTPIKQVPAFSHRGRADNTPPTFSLGRGIISSGVNPPNSIYSSPHSLGASSEKSGREPYYYKYSRTKLLDVFRTTSLTSQQTLKDGFVPVPTLTLDEPLEPLALCVPTTEEMTFLKGIDKGEIVSSGAPQVSKDGRNSSEFMQTRRTKLGVSPSLGSREDLPHGFDDCNDDKDDSTTKPGHTNYSEVTTERQLPYHRPLAHASSTFKSEAFREDDNAMRKADEGPVSRESSVKGGTNVQHGRTWDASSLEQLLNTSLPDWRDNPNNINSGTPDKGLQSSKNLNDGWGSNSATPSYPKENPKWHTGDESILRRQLSGILDKEQLARKTVQSAPEDLQFHYIDPSGAIQGPFSGADIIQWFEGGYFGLDLPVRLANAPNELPFSALGDAMPHLRSKAKPPPGFCGPKQNEFADTLGNASIGSLGKLHTGLNEIDPLRNETRHKHGSTVEAENRFLESLMSGNIGSSPLEKSAFSEGLPGYFGNNSSNLPSLGIDNGNNLFLLAKRMELERQRSLSNPYAFWPGIDASSKVSKPDIGLDDPIQQAKLLSSIIDHSRQTSHPQSADMSAILQGLSDKAPPGINDVAGWSKFASQCAPDPLQSKLDLHHDLNLSSQAPFGFQQQRLQPQPPLTNLLAQATDNSTLTSDKFLPSSLSQDPQLISKLQQQHLLQLHSQVPFSAQQMSLLDKILLLKQQQKQEEQQQLLQQQQQQLLSQVLSEHQSHQHFVDPSFGQLHGASIPIGNASNDPSQVQLSREKFQIGSQKPLNVLTDHATTYGNMALQATQGASYNVNSEDPSLILPPQMFGNVVQQKSWTAAIPEQLNDTRPKDVIPGSNVVEGSLLPGMSSKSNEDVNLVPKSSDSHTIIKTLEKISEDVPRLDATVTSFASDDATVEPLPLKNAEISVAIPPAAVHNIEISVPNSVPAVKVQEAIMPMEKLARDGSRDETSLEAEVKNVEVQEPRKSSDKKTKKQKSSKLLSSDQAKDFKNSGIQQSKQSKSGKSENDLKLKSDNIVGKSSDTACSPRKIRDGDGKIAIVDSQLDQSSASAVNSWNDGETVPVRDESRLSGSDSVLNSQTQSGQRAWKIASNFKPKSLLEIQEEEQKMAHTETVVSDISTSINTMSLSTPWAGIVSSSDPKASREIHKDSVNSESSEKHENLLTSRSRKSQLHDLLAEDDMEKSGAGDVRVSDTVQIASSPQVMAVRAEPMDENFIEAKDTKKSRKKSAKAKGIGTKASSAVPSADVPVGLSPVEKGKISRQMQQEKEAMPAIPSGPSFGDFVLWKGEVANVAPALAWSSDSGKVAKPTSLRDIQMEQERKISAAQHPQQISTPQKAQPTQVGRSSRTTTPSWSLSASSPSKAASTPLQNIATQSKHGGDDDLFWGPIESKQENQRVDVRPGSHGNWGNRNTPVKAVASTGLLSRQKSSGGKADHLSSSPAQSSQKGKQDPITKHSEAMGFRDWCENECVRLIGTKDTSFLEFCLKQSRSEAELLLIENLGSYDPDHEFIDQFLNYKELLPADIIEIAFQSRNERKVSAMASRDVNSGNAGGGDLDPDVSAGRDGSAKSGGGKKKGKKGKKINPSVLGFNVVSNRIMMGEIQTVED 1844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 986066 994760 - CmaCh05G002320.1 Cma05g00232 294350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1 264 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 371 550 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1620 1636 - -
Cma05g00232 1844 ProSiteProfiles GYF domain profile. 579 630 IPR003169 GO:0005515
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1179 1326 - -
Cma05g00232 1844 Pfam GYF domain 582 618 IPR003169 GO:0005515
Cma05g00232 1844 CDD GYF 579 636 IPR003169 GO:0005515
Cma05g00232 1844 Coils Coil 931 956 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 452 472 - -
Cma05g00232 1844 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1844 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 475 542 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1534 1693 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 405 424 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 375 396 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1778 1822 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1457 1487 - -
Cma05g00232 1844 Gene3D - 567 647 IPR035445 -
Cma05g00232 1844 SUPERFAMILY GYF domain 571 636 IPR035445 -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 10 33 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1179 1221 - -
Cma05g00232 1844 SMART gyf_5 580 635 IPR003169 GO:0005515
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1308 1326 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1560 1614 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1643 1687 - -
Cma05g00232 1844 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1844 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1222 1240 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1279 1295 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 227 252 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1379 1408 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 1373 1408 - -
Cma05g00232 1844 MobiDBLite consensus disorder prediction 71 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00232 - - - cmo:103487961 2972.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00232 Cma12g00478 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00232 Cma-Chr5:986066 Cma08g00007 Cma-Chr8:40542 9.88E-19 dispersed
Cma12g00478 Cma-Chr12:2493507 Cma05g00232 Cma-Chr5:986066 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00232 Cma_Chr05 FPKM 14.819403 16.052235 16.600752 16.95112 17.509592 17.654518 17.970608 19.949337 17.692034 18.298903