Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00235 ATGGAGGATGCTGTTGAGACGCTACCGAAAGTCGAAACGATCGATAACGAACTTCAACTTGCAAGATTCTCGTGTCACCAGTCTCGTATTAAAGCATACTCGTCAACCTGGCTCGATTTGAGAGTCTTCTATGTTAGGATTAGTAACTTCCAAGTCGACAGCTTGACGCCCGAGTTTCTCACACTCAACCATATACCTCTAAGTCCAGACACCCTTTTTGAGGTGAATGGTATTAGATGCAGTAGTCACTCAGAGGGCGTGTCTTCCTCTCTGAGAAGAGACAGGGCTGATAAGAAATCAGAAGAAGCTACTTTTGTGACTACTGATAATATAAGGTTGAGTGGAAGTGTAAAGTTTGAGGTATATGATAAGGAAGATTTGATTCTTTCTGGGATTCTCGAGATATCGAATTGTAATGGTTTGTTAGGCGAATCGAAAGGCAATGCCAAGAGGTGGAACATGAGTTGTGAGTCGAAGTTGTGTGCTGGTTTCTTGAAGGGAAAGCATATGATTGGAGCTGAAACCGCTTCCCCGATAATCGAGATTTACGTAGCTGGCAGCTTCTCAGGCAATCCTATAATCTTGACCAGAACTTTGCAGCTAAGCTCCCGAAAGAAGCCGAGTTGGAAATCCATGTTGGACGCCATTCCAGAGTCTGAGACACCTGAATCTAATGAAGATCACTTTCCAGAATATGATTTACAGGCCACAGAATATGCAAGATACAAACAGGACATCGACGACAACCACTACGACGACTACTACAACAACACGTACTGGAAGAGGAGAGAATATTTAGAGAATGAAGATGGTGAACTCTCCTGGTTTAATGCAGGTGACTTTTTCTTGTTTGAAATGGCTTCTTCCACTCTAATCTCTGACTCCGAGGCATGGAAGAGCCTGAAGGCTCATGTTGAGGACATTAACAGGACCCATCTGCGTGATTTGATGAGCGATGCTGCCAGATGCAAATCCTTGATGGTTGAGTATGACGGGATCTTGTTGGATTATTCACGACAACGGGCCACCGCTGACACCATTGGAAAGCTCTTCAAGTTAGCAGAGGCGGCAAATCTTAAGGATAAAATTAATCGGATGTTTAATGGGGAACATATAAACAGCACAGAAAATAGGGCAGTGCTGCATGTTTCTCTTCGTGCGTCAAGAGATGCAACAATACAGAGTAATGGAAAGAATGTTGTGCCTGATGTTTGGAAAGTTCTTGATAAAATCCAGGATTTCTCTGAGAAAGTTCGCAATGGTTCTTGGGTTGGAGCCACAGGAAAACCGCTGAAGGATGTTGTTGCTATTGGTATTGGTGGCAGCTTCTTGGGGCCTCTGTTTGTGCACACTGCACTTCAAACAGTTGTGGTGGTTTCAAAGACTTTTACCACTGCTGAAACTATGTTAAATGCCCGGACACTAAGGGAGTGGATTTCTGCTGCTCTTGGGCCTTCAGCTGTTGCAAAGCATATGGTAGCAGTTAGCACAAATCTGCCGCTTGTAGAGAAGTTTGGAATTGATCCTAATAATGCCTTTGCCTTCTGGGACTGGGTTGGTGGACGATATAGTGTTTGCAGTGCCGTGGGAGTGTTGCCTTTGTCTCTTCAATATGGCTTCCCAGTTGTTGAAAAATTCTTGAAGGGAGCTTCGAGCATTGACCAGCATTTCTACTCCTCACCTTTTGAGAAAAACATACCGGTGCTTTTGGGATTGTTGAGCGTATGGAATGTTTCTTTTCTTGGGCATGCTGCGAGAGTTAGCATGGAGAGTAATGGCAAGGGCGTTTCGATTGATGGGGTTCCACTTCCTTTCGAGGCTGGAGAAATCGACTTTGGGGAACCTGGAACTAATGGCCAACACAGTGAGGTCGTGAGTAATCATGATGAACTCATGTCTAACTTCTTCGCACAGCCAGATGCCCTAGCATATGGAAAGACGCCTGAGCAATTGCACAAGGAGAATGTTCCAGAGCATCTTATTTCCCACAAGTTGCTAGCAATCTATGAGCATAGAGTTGCTGTAGAAGGTTTTGTTTGGGGCATCAATTCTTTTGACCAGTGGGGAGTTGAATTGGGCAAGTCACTTGCTACCCAGGTCAGAAAGCAACTTAATGCGTCTAGAACCAAGGGAGAATCAATTGAAGGCTTTAACCACAGTACAACAACATTGATGAAAAGATACCTAGAGGCAAGTTCGGATGTCCCATCTGATCTTCCCACTCTTCTACCCAGAATTTGA 2241 44.44 MEDAVETLPKVETIDNELQLARFSCHQSRIKAYSSTWLDLRVFYVRISNFQVDSLTPEFLTLNHIPLSPDTLFEVNGIRCSSHSEGVSSSLRRDRADKKSEEATFVTTDNIRLSGSVKFEVYDKEDLILSGILEISNCNGLLGESKGNAKRWNMSCESKLCAGFLKGKHMIGAETASPIIEIYVAGSFSGNPIILTRTLQLSSRKKPSWKSMLDAIPESETPESNEDHFPEYDLQATEYARYKQDIDDNHYDDYYNNTYWKRREYLENEDGELSWFNAGDFFLFEMASSTLISDSEAWKSLKAHVEDINRTHLRDLMSDAARCKSLMVEYDGILLDYSRQRATADTIGKLFKLAEAANLKDKINRMFNGEHINSTENRAVLHVSLRASRDATIQSNGKNVVPDVWKVLDKIQDFSEKVRNGSWVGATGKPLKDVVAIGIGGSFLGPLFVHTALQTVVVVSKTFTTAETMLNARTLREWISAALGPSAVAKHMVAVSTNLPLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFPVVEKFLKGASSIDQHFYSSPFEKNIPVLLGLLSVWNVSFLGHAARVSMESNGKGVSIDGVPLPFEAGEIDFGEPGTNGQHSEVVSNHDELMSNFFAQPDALAYGKTPEQLHKENVPEHLISHKLLAIYEHRVAVEGFVWGINSFDQWGVELGKSLATQVRKQLNASRTKGESIEGFNHSTTTLMKRYLEASSDVPSDLPTLLPRI 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 997797 1007009 - CmaCh05G002350.1 Cma05g00235 294353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00235 746 Gene3D - 289 447 - -
Cma05g00235 746 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 292 455 - -
Cma05g00235 746 Pfam Phosphoglucose isomerase 664 724 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma05g00235 746 Pfam Phosphoglucose isomerase 456 622 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma05g00235 746 Pfam Phosphoglucose isomerase 336 455 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma05g00235 746 Hamap Glucose-6-phosphate isomerase [pgi]. 330 704 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma05g00235 746 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 665 732 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma05g00235 746 ProSitePatterns Phosphoglucose isomerase signature 1. 517 530 IPR018189 GO:0004347|GO:0006094|GO:0006096
Cma05g00235 746 ProSitePatterns Phosphoglucose isomerase signature 2. 677 694 IPR018189 GO:0004347|GO:0006094|GO:0006096
Cma05g00235 746 Gene3D - 624 663 - -
Cma05g00235 746 SUPERFAMILY SIS domain 293 732 IPR046348 GO:0097367|GO:1901135
Cma05g00235 746 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 456 664 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma05g00235 746 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 292 455 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma05g00235 746 Gene3D - 687 732 IPR023096 GO:0004347|GO:0006096
Cma05g00235 746 CDD SIS_PGI_1 405 536 IPR035476 -
Cma05g00235 746 Gene3D - 454 543 - -
Cma05g00235 746 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 295 731 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma05g00235 746 Gene3D - 664 686 - -
Cma05g00235 746 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 665 732 - -
Cma05g00235 746 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 456 664 - -
Cma05g00235 746 CDD SIS_PGI_2 589 700 IPR035482 -
Cma05g00235 746 Gene3D - 544 585 - -
Cma05g00235 746 Gene3D - 586 623 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00235 K01810 GPI, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9] - csv:101217944 830.476
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00235 Cma12g00477 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00235 Cma-Chr5:997797 Cma14g02065 Cma-Chr14:14342559 2.89E-44 dispersed
Cma12g00187 Cma-Chr12:860516 Cma05g00235 Cma-Chr5:997797 1.98E-11 transposed
Cma01g01906 Cma-Chr1:12445489 Cma05g00235 Cma-Chr5:997797 5.79E-83 wgd
Cma12g00477 Cma-Chr12:2481904 Cma05g00235 Cma-Chr5:997797 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g932 Blo01g01559 . Bda01g00534 . Bpe02g00396 . . Bma01g02316 Cmo05g00243 Cmo12g00427 . . . Car12g00451 . . Cpe07g00429 Bhi04g00254 . . . . . . Cla08g01496 Cam08g1986 Cec08g1561 Cco08g1698 Clacu08g1676 . Cre08g1459 Cone4ag1905 Cone7ag1820 . . . . . Cme03g01964 . . . . . . . . . . . Cma12g00477 Cma05g00235 Car05g00195 . Cpe11g00194 . . . . . . . . . . . . . . . Lsi08g01401 Csa02g02045 Chy03g01468 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004710 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00235 Cma_Chr05 FPKM 53.641212 60.777641 25.976961 26.218828 16.986559 14.918974 16.398018 57.600601 57.036175 58.68676