Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00237 ATGTCATTTTCTTCGCGCTCCGCAAAGCTCGCCCTTCTGGCTCTTCTCTCTGCCTCCACTTTGTATTGCTTCTACAAGTCCCGCCGTCTCAGAAAGCTTAAACTCTCCTTAAACCCTACGGGTTGTTCTCGCAGACCCAAACTTTTCTTCATTTCCCAAACTGGTACCTCAAAGGCCCTAGCGCATCGTCTGCTTAACGTTTTGAATTCAAATGAGTTGGCGTTTGATATTGTCGATCCCAAGGATTTTGAGCCTGAAGATCTTTTTAAGGAGGCTTTAGTTTTGTTCGTTGCTTCCACCTGGGAAGATGGAGGACCGCCTCCTCATGCTAAATTCCTCGCCAATTGGCTTTCTGAGAGCGCGGAGGATTTCAGAGTTGGTTCGTTGTTGCTTTCTCAGTGTAAGTTTGCTGTATTTGGCGTTGGTAGTCGAGCTTATGGAGAGACATTCAATGCGGTTGCAAGGGATTTTTCCAAGCGGATGAAGGCATTGGGTGCGAAGGAGATATTAGCGGTCGGTGAGGGAGACGTTGACGGAGGTGATATAGATAAGTGTTTTGATGATTGGAGTCGGCAATTGTTGAAGGTTTTGAAGGTTGATGCGGTGGGCACTGGTGCGGATTTATATTCTGGGATTGACGAGGACTTTGATGCTGAAAGTGTTGAGGAGGATGACGAAGATGCCGACCCTGGGGAGGAGGACATCGTTGATCTTGAGGATATTGCTGGGAAGGGTCCTTCGAGAAAGTCTACCAATGTAGTCGAAACTAATGGGAAATTGAATGGGAAAAAAGTTATGGTTACCCCGGTGATTAGAGCGAGCTTAGAAAAGCAGGGGTATAAAATTATTGGCTCACACAGCGGTGTGAAAATATGTAGATGGACAAAGTCTCAGCTTCGAGGACGAGGAGGTTGCTATAAGCATTCGTTTTATGGCATAGAAAGTCATCGATGCATGGAGGCAACTCCGAGTTTGGCCTGTGCCAACAAATGTGTTTTCTGCTGGAGGCACCACACAAATCCAGTAGGAAAGAGTTGGCAGTGGGAGATGGATGATCCATTGGATATTGTGAATTCAGCAATCGATTTACACACAAAAATGATCAAGCAAATGAAAGGTGTTCCAGGTGTTACGCAGGAGAAATTGGAAGAAGGCTTGTCTCCAAGACATTGTGCCTTATCTCTTGTTGGTGAACCTATTATGTACCCAGAGATTAACACACTTGTTGATGAATTGCACCGAAGGCGGATTTCAACTTTCTTAGTTACAAATGCTCAGTTTCCCGATAAAATAAAATCATTGAAGCCGGTCACCCAGTTGTATGTAAGTGTAGATGCTGCGACGAAGGAGAGCTTGAAGGCAATTGATAGACCACTTTTTGGGGACTTTTGGGAGCGGTTCATTGATTCCTTGAAAGCTCTAAATGACAAGCAACAGCGAACAGTTTATCGATTGACATTGGTAAAAGGGTGGAACACAGAAGATATTGATGCCTATTCGAATCTTTTTAGTCTTGGTAAACCTGATTTTGTAGAAATCAAAGGCGTCACATATTGTGGATCATCTAATACATCAAAGTTGACAATGGAGAACGTTCCTTGGCATTCTGATGTAAAGTCTTTTTCTGAGGCTTTAGCTGCAAAAAGTCAAGGGGAGTATGAAGTTGCTTGTGAGCATGTGCATTCATGTTGCGTTCTCTTGGCCAAAACTGACAAATTTAGAGTCGATGGGCAGTGGTTCACTTGGATAGATTATGAGAAATTCCATGACCTGGTGGCCTCTGGAAAACCTTTTGATAGCAAGGACTACATGGCTCCAACACCATCGTGGGCTGTATATGGGGCTGACGAAGGTGGATTTGATCCTGTTCAATCTCGATACCGGAAGGAGCGACATCATAGACCAAAACCCACATCCTGA 1920 44.53 MSFSSRSAKLALLALLSASTLYCFYKSRRLRKLKLSLNPTGCSRRPKLFFISQTGTSKALAHRLLNVLNSNELAFDIVDPKDFEPEDLFKEALVLFVASTWEDGGPPPHAKFLANWLSESAEDFRVGSLLLSQCKFAVFGVGSRAYGETFNAVARDFSKRMKALGAKEILAVGEGDVDGGDIDKCFDDWSRQLLKVLKVDAVGTGADLYSGIDEDFDAESVEEDDEDADPGEEDIVDLEDIAGKGPSRKSTNVVETNGKLNGKKVMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWEMDDPLDIVNSAIDLHTKMIKQMKGVPGVTQEKLEEGLSPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKSLKPVTQLYVSVDAATKESLKAIDRPLFGDFWERFIDSLKALNDKQQRTVYRLTLVKGWNTEDIDAYSNLFSLGKPDFVEIKGVTYCGSSNTSKLTMENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKFHDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQSRYRKERHHRPKPTS 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1013188 1019271 - CmaCh05G002370.1 Cma05g00237 294355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00237 639 Pfam Wyosine base formation 506 569 IPR013917 -
Cma05g00237 639 Gene3D Aldolase class I 250 581 IPR013785 -
Cma05g00237 639 Pfam Flavodoxin 48 189 IPR008254 GO:0010181
Cma05g00237 639 PRINTS Flavodoxin signature 47 60 IPR001094 GO:0010181
Cma05g00237 639 PRINTS Flavodoxin signature 95 106 IPR001094 GO:0010181
Cma05g00237 639 PRINTS Flavodoxin signature 133 143 IPR001094 GO:0010181
Cma05g00237 639 PRINTS Flavodoxin signature 158 177 IPR001094 GO:0010181
Cma05g00237 639 SFLD Radical SAM 262 574 IPR007197 GO:0003824|GO:0051536
Cma05g00237 639 SFLD tRNA wybutosine-synthesizing 262 574 IPR034556 GO:0008033|GO:0051539
Cma05g00237 639 Pfam Radical SAM superfamily 323 501 IPR007197 GO:0003824|GO:0051536
Cma05g00237 639 Gene3D - 26 204 IPR029039 -
Cma05g00237 639 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 3 633 - -
Cma05g00237 639 MobiDBLite consensus disorder prediction 613 639 - -
Cma05g00237 639 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 3 633 IPR034556 GO:0008033|GO:0051539
Cma05g00237 639 CDD Radical_SAM 323 522 - -
Cma05g00237 639 SUPERFAMILY Radical SAM enzymes 324 508 - -
Cma05g00237 639 ProSiteProfiles Flavodoxin-like domain profile. 46 194 IPR008254 GO:0010181
Cma05g00237 639 SUPERFAMILY Flavoproteins 47 198 IPR029039 -
Cma05g00237 639 ProSiteProfiles Radical SAM core domain profile. 311 554 IPR007197 GO:0003824|GO:0051536
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00237 K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] - csv:101217239 1181.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00237 Cma-Chr5:1013188 Cma10g00396 Cma-Chr10:1833603 4.34E-09 dispersed
Cma05g00237 Cma-Chr5:1013188 Cma11g00391 Cma-Chr11:1942984 5.95E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g939 . . . . . . . . Cmo05g00245 . . . . . Sed11g1032 . . Bhi04g00248 Tan02g1957 Cmetu03g0117 . Hepe10g0647 . Lcy13g1990 Cla08g01493 Cam08g1982 Cec08g1556 Cco08g1693 Clacu08g1672 . Cre08g1455 . . Cone17ag1338 . . . . Cme03g01960 Blo17g00803 . Bda08g01288 . . Bpe05g00087 . Bma05g00116 . . . . Cma05g00237 Car05g00199 . Cpe11g00197 . . . . . . . . . . . . . . . Lsi08g01398 Csa02g02049 Chy03g01465 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009285 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00237 Cma_Chr05 FPKM 9.987968 12.025362 12.054608 12.239244 14.734397 13.696648 13.491095 18.536566 16.802353 19.557629