Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00253 ATGGAATATAGAGCATACCTTATGTTCATCATCAACGGAGCTTCCTATCACAGTCCAATCCAGATTCTAGATCCAAAAATGCAGGCGATCGTGAAAGCATTACGATCGTGGCAAGAGACGTTGAAGATCGCGAACTCGCAGCACTCGTGTAGGAGAGAAACGAATCAAGTGGAAAAATTTTTGGAAGGATCAGAATCAAGAGGTTCGTCTTCTCCACTGAAAGGTATGGAGAATATTACCGTGGCGGAGATCGTTTCGAGAAAGGGAGATGGAAGTATTGGCTCCTCGTGGTTTTCCTGCAGTGCGGATGATGCGGCCATTGATACCGTGCAAAATGTAATGGCTAGAAACAACGTTGGATCGTTGGTGGTGTTGAAGCCTGAAGGACAACACATCGCCGGAATTGTAACGGAAGGAGACTATCTGAAGAAGATAATAGCAGATGGGAGATGTCCCATATTCACAAAAGTTGGGGAAATAATGACTTGTGAGGACAAACTAGTAACCGTTACGTCCGACACGAACATCCTTAAAGCAATGCAGCTTATGACAGAGAATCGCACAAGACATGTTCCTGTGATAGATGGCAAACTAGTTGGCATGATTTCTATAGTAGATGTTGTCAAAGCAGTGGTAAAGCAGCAAAATGGGGAACTCGAGCAAATAAACGAGTATATAAAAGGAGAATCCTATTAA 696 43.39 MEYRAYLMFIINGASYHSPIQILDPKMQAIVKALRSWQETLKIANSQHSCRRETNQVEKFLEGSESRGSSSPLKGMENITVAEIVSRKGDGSIGSSWFSCSADDAAIDTVQNVMARNNVGSLVVLKPEGQHIAGIVTEGDYLKKIIADGRCPIFTKVGEIMTCEDKLVTVTSDTNILKAMQLMTENRTRHVPVIDGKLVGMISIVDVVKAVVKQQNGELEQINEYIKGESY 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1070711 1072970 + CmaCh05G002530.1 Cma05g00253 294371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00253 231 Gene3D - 74 231 IPR046342 -
Cma05g00253 231 ProSiteProfiles CBS domain profile. 93 153 IPR000644 -
Cma05g00253 231 SMART cbs_1 166 212 IPR000644 -
Cma05g00253 231 SMART cbs_1 96 146 IPR000644 -
Cma05g00253 231 CDD CBS_pair_bac_euk 94 209 IPR044725 -
Cma05g00253 231 SUPERFAMILY CBS-domain pair 104 219 IPR046342 -
Cma05g00253 231 Pfam CBS domain 100 145 IPR000644 -
Cma05g00253 231 Pfam CBS domain 157 212 IPR000644 -
Cma05g00253 231 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL 27 229 - -
Cma05g00253 231 PANTHER CYSTATHIONINE BETA-SYNTHASE (CBS) FAMILY PROTEIN 27 229 - -
Cma05g00253 231 ProSiteProfiles CBS domain profile. 161 219 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00253 - - - cmax:111491856 455.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00253 Cma-Chr5:1070711 Cma20g00294 Cma-Chr20:1435172 3.35E-28 dispersed
Cma12g00461 Cma-Chr12:2411428 Cma05g00253 Cma-Chr5:1070711 4.67E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g958 . . . . . . . . Cmo05g00259 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01694 . Bma01g00759 . . . . . Cma05g00253 Car05g00211 . . . . . . . . . . . . . . . . . Lsi08g01384 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012002 0 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00253 Cma_Chr05 FPKM 2.952371 4.266876 2.749487 2.132065 0.78832 0.483552 0.601142 0.0 0.0 0.0