Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00258 ATGTTTAGGAATCAGTACGATACGGACGTGACGACATGGAGTCCGGCGGGGAGGTTGTTTCAGGTGGAGTACGCGATGGAGGCCGTGAAGCAAGGCTCCGCTGCCATTGGCCTCCGATCCAAGACCCATGTGGTTCTTGCCTGCGTCAATAAGGCTAACTCTGAACTATCCTCGCACCAGAAGAAGATCTTCAAAGTCGACGATCACATCGGCGTCGCCATTTCCGGCCTTACTGCTGATGGACGCGTTCTTTCCCGTTATATGAGATCTGAGTGTATCAATTACAGCTACACTTACGAATCTCCGCTTCCCGTTGGTCGTCTCGTAGTTCAACTTGCCGATAAGGCTCAGGTCTGCACCCAACGCTCATGGAAACGTCCATACGGTGTTGGTCTGCTGGTAGGTGGTCTGGATGAGTCTGGCGCTCATCTCTACTTCAACTGCCCGAGCGGGAATTACTTTGAATATCAAGCTTTTGCCATAGGATCCCGTTCACAGGCTGCAAAGACGTACTTGGAAAGGAGGTTTGAGAACTTCAAGGACTCTTCTAAAGACGACTTAATCAAAGATGCACTGATGGCTACCAGAGAAACCTTGCAAGGAGAAAAACTGACTTCCTCCGTATGCACGATTTCCATTTTGGGAGTTGGTGAACCTTTCCATATACTGGATAGGGAAACTGTTCAGAAGTTGATTGATGAATTTGAGATTGTTAAGGAGGATGATGTTCCTGCTGCGGATCAGGATGTCGCCCCGGAGCACGGTGATTCTGCTGCCCCCGAACCAGCTGCAGGGACAGACCAAGGTAGTGCCCCAGATCAAGGCGTGGCGCCAATGGATATCTAA 846 50.35 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDDHIGVAISGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYFNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFKDSSKDDLIKDALMATRETLQGEKLTSSVCTISILGVGEPFHILDRETVQKLIDEFEIVKEDDVPAADQDVAPEHGDSAAPEPAAGTDQGSAPDQGVAPMDI 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1088013 1091299 - CmaCh05G002580.1 Cma05g00258 294376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00258 281 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 235 IPR029055 -
Cma05g00258 281 MobiDBLite consensus disorder prediction 242 281 - -
Cma05g00258 281 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511|GO:0019773
Cma05g00258 281 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 272 - -
Cma05g00258 281 Pfam Proteasome subunit 29 213 IPR001353 GO:0005839|GO:0051603
Cma05g00258 281 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511|GO:0019773
Cma05g00258 281 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 272 - -
Cma05g00258 281 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 236 IPR029055 -
Cma05g00258 281 SMART Proteasome_A_N_2 6 28 IPR000426 GO:0006511|GO:0019773
Cma05g00258 281 ProSiteProfiles Proteasome alpha-type subunit profile. 21 232 IPR023332 -
Cma05g00258 281 CDD proteasome_alpha_type_1 6 215 IPR035144 GO:0019773
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00258 K02725 PSMA1; 20S proteasome subunit alpha 6 [EC:3.4.25.1] - csv:101215076 545.428
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00258 Cma12g00455 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00258 Cma-Chr5:1088013 Cma18g00562 Cma-Chr18:3706139 2.69E-43 dispersed
Cma12g00455 Cma-Chr12:2395134 Cma05g00258 Cma-Chr5:1088013 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g968 Blo01g01569 Blo12g00903 Bda01g00523 Bda03g00266 Bpe02g00383 Bpe04g00220 Bma04g00214 Bma01g02327 Cmo05g00263 Cmo12g00405 . . . Car12g00430 . . Cpe07g00407 Bhi04g00191 . . . Hepe10g0622 . . Cla08g01470 Cam08g1958 Cec08g1533 Cco08g1671 Clacu08g1648 . Cre08g1433 Cone4ag1921 Cone7ag1833 . . . . . Cme03g01936 . . . . . . . . . . . Cma12g00455 Cma05g00258 Car05g00215 . Cpe11g00213 . . . . . . . . . . . . . . . Lsi08g01380 Csa02g02071 Chy03g01441 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005435 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00258 Cma_Chr05 FPKM 57.873177 65.249062 47.51115 45.119545 48.60643 57.865139 47.862976 44.10202 47.51038 40.226868