Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00261 ATGGCAAGACAGCTGCCCCAGAATCATCTTGAGAATGCCATTCCAGGAACTACACCTAGTCATTGTGTGCAGGAAGAGCATCTGATCTCTGCACGCAAATGGTATTTCTCCAGACAGGAAATTGAAAATCATTCTCCATCCAGGAAGGATGGAGTTGATTTCAAGAAAGAGTCTCAACTGCGGAAGTCATATTGCTTGTTTCTTCAGGAGCTTGGCATGAAGCTGAAAGTGCCTCAAGTAACAATTGCAAGTGCCATGATGGTATGCCACCGGTTCTATATGTGTCAGTCACATGCTAAAAATGACTGGCAGACAATCGGAACAGCAGGTATCTTTCTTGCCTGTAAGATTGAAGAGACACCACGGTTTCTGAATGATGTCGTCGTTGTGGCTTTTGAGTTGATATTCAAACGGGATTCTTCTGCCTCTAAAAGAATTAGACAAAAAGAAGTTTTCAACAAACAAAAGGAATTAGTCTTGATTAGTGAGAGGCTTATATTGTCAACACTTGCATTTGATGTTGACATTCAGCTTCCCTACAAGCCACTTGTTGCTACTTTAAAAAAATTGGGAATGGCTGCGGATCTTGGGAAGGTGGCTTGGAATTTTGTAAATGATTGGCTTTATACAACACTGTGCTTGGAGTACAAACCCCATTATATTGCTGCAGGTTCGATATTCCTTGCTTCCAAATTTCAAAAAGTAAAATTGCCTTCGAACGAGGGAAAGGCTTGGTGGATGGAGTTCGATGTTTCGCCAAAACAGTTACAAGAGGTTATACAGCAAATGTTGAAGTTATTTGAGAAAGATAGAAAACAAAGCCTACCACCTTCAAAAGAGAAGAATCATAAGCCAGAAGCTTTAGATGGACAGACAAGAGTTGATAGCTCCCAATCATGTATATCAAGCGTGACGATTTCTGATCATCTCGATAGTCACAAAGCCATTAGGGAGGCCAGTGACTGCAACAAGTCTGTAACGCCTAGTCGATGCCACAATCAGCAAAATGTGAATTACCGCATTAGTCCTGTGGAAGTTTTACCCTGCCAAACAAGCGATACTGGGAGTTCAAGTAGTGCCATTGACAATGGTGATACTGGGATTTGTCAGAATACTGAAGAAAATTATCCTGATCAGATCAAACAGTCAAAAACTGTTGCTATTTCTATGTCTAAGGACTACAAAAAGATAAACTTATGTCAAATCAGAGAGGCAATAAAGAGAAGACGACTCTGTAGAACTACAAGCACAACGGAGGTACAGCCAATGAACTCGGATGTTGACAGCGAAGCATGGATAGAAAAGGAGCTGGAACAGGGAATAGAGCTAGAATATGAATCCTCATTGAAGAAGAGACAAAAGGCATCATGA 1371 41.06 MARQLPQNHLENAIPGTTPSHCVQEEHLISARKWYFSRQEIENHSPSRKDGVDFKKESQLRKSYCLFLQELGMKLKVPQVTIASAMMVCHRFYMCQSHAKNDWQTIGTAGIFLACKIEETPRFLNDVVVVAFELIFKRDSSASKRIRQKEVFNKQKELVLISERLILSTLAFDVDIQLPYKPLVATLKKLGMAADLGKVAWNFVNDWLYTTLCLEYKPHYIAAGSIFLASKFQKVKLPSNEGKAWWMEFDVSPKQLQEVIQQMLKLFEKDRKQSLPPSKEKNHKPEALDGQTRVDSSQSCISSVTISDHLDSHKAIREASDCNKSVTPSRCHNQQNVNYRISPVEVLPCQTSDTGSSSSAIDNGDTGICQNTEENYPDQIKQSKTVAISMSKDYKKINLCQIREAIKRRRLCRTTSTTEVQPMNSDVDSEAWIEKELEQGIELEYESSLKKRQKAS 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1102526 1110061 - CmaCh05G002610.1 Cma05g00261 294379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00261 456 SUPERFAMILY Cyclin-like 32 175 IPR036915 -
Cma05g00261 456 MobiDBLite consensus disorder prediction 272 290 - -
Cma05g00261 456 MobiDBLite consensus disorder prediction 272 292 - -
Cma05g00261 456 CDD CYCLIN 60 131 IPR013763 -
Cma05g00261 456 SMART cyclin_7 66 168 IPR013763 -
Cma05g00261 456 SMART cyclin_7 181 265 IPR013763 -
Cma05g00261 456 SUPERFAMILY Cyclin-like 178 278 IPR036915 -
Cma05g00261 456 Gene3D - 24 174 - -
Cma05g00261 456 PANTHER CYCLIN-T1-3 24 447 - -
Cma05g00261 456 Pfam Cyclin, N-terminal domain 34 174 IPR006671 -
Cma05g00261 456 CDD CYCLIN 178 267 IPR013763 -
Cma05g00261 456 Gene3D - 176 282 - -
Cma05g00261 456 PANTHER CYCLIN 24 447 IPR043198 GO:0006357|GO:0016538
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00261 K15188 CCNT; cyclin T - csv:101214841 780.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00261 Cma12g00447 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00261 Cma-Chr5:1102526 Cma13g00448 Cma-Chr13:4997132 1.75E-114 dispersed
Cma12g00447 Cma-Chr12:2353985 Cma05g00261 Cma-Chr5:1102526 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g991 . . . . . . . . Cmo05g00266 Cmo12g00397 . . . Car12g00422 . . Cpe07g00401 Bhi04g00195 . . . Hepe10g0615 . . Cla08g01465 Cam08g1953 Cec08g1528 Cco08g1666 Clacu08g1643 . Cre08g1428 . . Cone17ag1357 . . . . Cme03g01931 . . . . . . . . . . . Cma12g00447 Cma05g00261 Car05g00219 . Cpe11g00216 . . . . . . . . . . . . . . . Lsi08g01374 Csa02g02077 Chy03g01436 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008671 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00261 Cma_Chr05 FPKM 7.219745 7.959759 9.837793 10.947259 8.812883 7.790234 9.61217 12.595451 12.674563 13.196149