Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00263 ATGGCGACCCCAGTTGAGCCTCCAAATGGGGTTAGATCTCAAGGAAAGCATTATTATTCAATGTGGCAGACATTGTTTGAGATTGATACTAAATATGTACCCATTAAGCCTATTGGTCGAGGGGCATATGGCATAGTGTGTTCTTCTGTGAATAGGGAAACCAATGAGAAAGTTGCTATAAAGAGGATACATAATGCATTTGAGAATCGTATCGATGCCCTCCGAACGTTGCGTGAATTGAAGCTCCTTAGACATCTTCGCCACGAAAACGTCATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGCTTCAAAGATGTTTATTTGGTTTATGAGCTGATGGATACTGATTTACATCAGATTATTAAGTCTTCTCAAATGCTAACCAATGATCACTGCCAGTATTTTCTCTTTCAGTTGCTCCGAGGACTAAAGTATCTGCATTCTGCGAACATCCTACACCGGGACTTGAAGCCGGGGAACCTCCTTGTCAACGCAAATTGTGACCTTAAGATATGCGATTTCGGGTTAGCACGAACGAGCAATGGGAAGAACCAGTTTATGACAGAGTATGTAGTAACTCGATGGTATCGAGCCCCCGAACTGCTGCTCTGCTGTGAGAACTACGGGACATCGATCGATGTGTGGTCTGTAGGATGCATCTTTGCCGAGCTTCTCGGTAGGAAACCTATCTTCCCCGGTACGGAATGTTTGAATCAACTCAAATTGATAATTAACATATTGGGTAGCCAAAGAGAGGAAGATCTTGAGTTCATAGACAATCAAAAGGCAAGAAGGTATATAAAATCCCTCCCATACTCTCCAGGGGCTCCTCTGTACCATCTTTATCCGAACGCTCATCCTCTTGCAATCGATCTGCTACAAAAGATGCTCGTTTTCGACCCATCGAAGAGGATTAGTGTAACCGAAGCATTGCAACATCCTTTCATGTCGCCACTGTATGATCCAAACATCAATCCTCCAGCTCAGGTCCCGATCGATCTCAACATAGACGAGGAGCTAGGTGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCATCCTGAAGATCTGGAAAAACATGCCGAAATAACATGTTTTCATCCCGAACCTACTTCGAGTAGTACTGCGGTGTATTCTTGA 1161 43.24 MATPVEPPNGVRSQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQMLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREEDLEFIDNQKARRYIKSLPYSPGAPLYHLYPNAHPLAIDLLQKMLVFDPSKRISVTEALQHPFMSPLYDPNINPPAQVPIDLNIDEELGEEMIREMMWKEMLHYHPEDLEKHAEITCFHPEPTSSSTAVYS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1112475 1116016 + CmaCh05G002630.1 Cma05g00263 294381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00263 386 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00263 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Cma05g00263 386 CDD STKc_TEY_MAPK 26 361 - -
Cma05g00263 386 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Cma05g00263 386 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00263 386 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Cma05g00263 386 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00263 386 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Cma05g00263 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
Cma05g00263 386 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Cma05g00263 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
Cma05g00263 386 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00263 Cma12g00445 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00263 Cma-Chr5:1112475 Cma08g00890 Cma-Chr8:5512522 1.30E-152 dispersed
Cma04g00758 Cma-Chr4:3866271 Cma05g00263 Cma-Chr5:1112475 3.37E-154 transposed
Cma16g00631 Cma-Chr16:3258541 Cma05g00263 Cma-Chr5:1112475 0 transposed
Cma12g00445 Cma-Chr12:2332098 Cma05g00263 Cma-Chr5:1112475 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68572 PF00069 Pkinase 1.40E-71 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00263 K20535 - csv:101213478 759.599