Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00268 ATGGCCGATGGAGAAGAAGCCGCACGGCGTCTTACGGCGGTCAATGACTACCGGAAGAAACTCCTTCAGCACAAAGAGCTCGATGCTAGAGTCCGATCTCTGAGGGAGAATTTACGAGGTGCAAAGAAAGAATTTAACAAGACGGAAGATGATTTGAAGTCTCTGCAAAGTGTTGGCCAGATTATTGGAGAAGTTCTCAGGCCACTTGACAATGAACGCTTGATTGTCAAAGCAAGCAGTGGACCAAGATACGTGGTTGGATGCCGTACTAAGGTCGATAAGGAAAAATTGACGTCTGGTACTAGAGTGGTACTTGATATGACAACACTCACCATTATGAGGGCTCTTCCTCGTGAAGTAGATCCAGTTGTGTATAATATGTTGCATGAAGATCCTGGCAATGTTAGCTATTCTGCTGTGGGTGGTTTGTCTGATCAAATTAGAGAATTGAGGGAGTCTATTGAGCTACCTCTCATGAATCCTGAGCTTTTCCTTAGGGTTGGTATCAAACCTCCCAAGGGTGTGCTTCTATACGGTCCTCCCGGTACTGGCAAGACATTGTTGGCAAGAGCCATTGCGAGTAACATAGATGCCAACTTCTTAAAGGTTGTATCGAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCAAGGTTAATACGGGAGATGTTTGGATATGCACGCGATCATCAGCCCTGCATAATTTTTATGGATGAGATTGATGCCATTGGTGGGCGGAGATTCAGTGAGGGAACAAGTGCGGACCGGGAAATTCAACGAACATTGATGGAGTTGCTTAATCAGCTTGATGGTTTTGATCAGCTTGGCAAGGTCAAAATGATAATGGCCACAAACAGGCCAGATGTTCTTGACCCTGCACTTCTTCGACCAGGGCGATTGGACCGCAAAATAGAGATTCCTCTGCCAAATGAGCAGTCCAGAACGGAGATCCTTAAGATTCATGCAGCTGGAATTGCCAAGCATGGCGAGATTGATTATGAAGCTGTCGTAAAGCTTGCAGAGGGCTTTAATGGAGCTGATTTGCGAAATGTGTGCACCGAAGCTGGAATGTCAGCCATCCGTGCTGAACGTGACTATGTCATCCACGAAGATTTCATGAAGGCAGTACGAAAACTGAACGAAGCGAAGAAACTCGAGTCCAGTGCACACTACAGTGCTGATTTCGGAAAAGACTGA 1197 45.78 MADGEEAARRLTAVNDYRKKLLQHKELDARVRSLRENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRTKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYSADFGKD 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1133555 1137013 - CmaCh05G002680.1 Cma05g00268 294386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00268 398 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 4 385 - -
Cma05g00268 398 SMART AAA_5 171 310 IPR003593 -
Cma05g00268 398 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 22 379 IPR005937 GO:0005737|GO:0030163|GO:0036402
Cma05g00268 398 Pfam AAA+ lid domain 331 373 IPR041569 -
Cma05g00268 398 Gene3D - 128 308 IPR027417 -
Cma05g00268 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 383 IPR027417 -
Cma05g00268 398 Pfam ATPase family associated with various cellular activities (AAA) 175 308 IPR003959 GO:0005524|GO:0016887
Cma05g00268 398 Pfam Proteasomal ATPase OB C-terminal domain 62 117 IPR032501 -
Cma05g00268 398 ProSitePatterns AAA-protein family signature. 278 296 IPR003960 GO:0005524|GO:0016887
Cma05g00268 398 Gene3D - 23 127 IPR012340 -
Cma05g00268 398 CDD AAA 141 308 - -
Cma05g00268 398 PANTHER - 4 385 - -
Cma05g00268 398 Coils Coil 24 58 - -
Cma05g00268 398 Gene3D - 309 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00268 K03064 PSMC6, RPT4; 26S proteasome regulatory subunit T4 - csv:101212754 770.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00268 Cma-Chr5:1133555 Cma12g01135 Cma-Chr12:8938756 0 dispersed
Cma05g00267 Cma-Chr5:1129253 Cma05g00268 Cma-Chr5:1133555 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1001 . . . . . . . . Cmo05g00271 . . . . . . . . Bhi04g00204 . . . . . . Cla08g01460 Cam08g1946 . Cco08g1659 Clacu08g1636 . Cre08g1422 . . Cone17ag1362 Cone20ag0119 . . . Cme03g01925 . Blo18g00799 Bda08g01258 Bda01g01512 Bpe02g01708 . Bma01g00746 . . . . . Cma05g00268 Car05g00222 . Cpe11g00221 . . . . . . . . . . . . . . . Lsi08g01368 Csa02g02085 Chy03g01429 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002198 2 2 2 2 2 1 3 1 2 2 1 1 4 2 2 4 1 1 4 1 2 2 2 2 0 2 3 0 4 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00268 Cma_Chr05 FPKM 22.805937 24.925524 24.106596 22.761944 25.354774 24.705154 23.376575 36.755157 38.199783 36.906895