Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00271 ATGGAGAAACTGGCGATTCCTTGCCAAACAAAGCCTCCAATTTCCGTCCCCGCTTCAATTATCAAAACCAAACCCCTTAAATTCTCCTCAAAACCAACTCAAACTACTATATTTTTCACCCAGAAAACCAGTTCAAAGTCCAATGACGACCATTTGAGTTACCTTTGCCGCCATGGCCTCCTCCGAGAAGCCATAGCAGCCATTGATTCAATGTCCAGACATGGGTCTAAGTTAAGCACTAACACGTATATCAATTTGCTTCAAACTTGCATAGATGCGGATTCTATTGAAGTGGGTCGTGAGCTTCATGTTCGTCTCTGTTTAGTTGATCAGGTGAACCCATTTGTCGAGACGAAGCTAGTAAGCATGTATGCGAAATGTGGGTTTCTAAAAGATGCACGTAAGGTGTTTGATGAAATGCTGGAGAGAAATTTGTACACTTGGTCGGCAATGATAGGCGGATATTCAAGAGAGCAGAGATGGACAGAAGTAGTTGAACTTTTCTTTTTGATGATGGGTGATGGAGTACTGCCTGATGCTTTTCTTTTCCCAAGAATACTACAAGCTTGTGGGAATTGCGAGGATCTTGAAACTTTGAAGTTGATGCATTCTGTGGTTATTCGATGTGGGTTGAGCTGTTCTATGCGTGTAAGCAATTCTATTTTGACGGCATTGGTTAAATGTGGGAACTTGAGTTTGGCTAGGAAGTTCTTTGAGAACATGGACGAAAGAGATGAGGTCTCTTGGAATGCTATAATAGCTGGCTATTGCCGGAAGGGACATGGCGATGAAGCTAGGACTTTGCTCGACACGATGAACGATCAAGGATTCAAACCGGGTTTGGTTACTTGTAACATACTGATTGCTAGTTATAGCCAGTTGGGGAAATGTAATCTTGTTATAGAACTGAAGAAGAAGATGGAAAGTATGGGGATCACTCCTGATGTCTATACTTGGACTTCGATGATTTCGGGTTTTGCTCAAAGCAGCAGGATTAATCTGGCATTGGATTTCTTCAAGGAGATGATTCTAGCAGGGGTTGAACCAAATGCTGTAACTATTACGAGCGTGTCGTCGGCGTGTGCTTCCTTAAAATCGCTGCAAAAAGGACTGGAAATACATTGTTTAGCTATTAAAATGGGAATTGCTCATCAAGTATTGGTTGGGAATTCACTTATTGATATGTATTCTAAATGTGGAAAATTGGAAGCTGCTCATCATGTCTTTGATACAATTTTAGAAAAAGATATTTATACGTGGAACTCGATGATTGGAGGATATTGTCAGGGTGGATACTGTGGTAAAGCTTATGAACTTTTTATGAGAATAAGGGAATCAAATGTAATGCCTAATGTTGTGACATGGAATGTGATGATATCAGGGTGTATACACAATGGAGATGAGGATCAAGCTATGAACCTCTTTCAAATGATGGAAAATGATGGGGAGGTTAATCCGAATACGGCGTCCTGGAATTCTCTGATTGCAGGGTACCATCGGCTCGGTGAAAAGAACAAAGCTCTAGCAATATTTCGACAAATGCAGTCTCTTAATTTTAATCCTAATTCAGTGACTATCTTGAGTATCTTACCAGTTTGTGCAAATGTAATGGCAGAGAAGAAAATAAAGGAAATCCATGGCTGTGTGTTGCGTAGAAACCTGGAAACGGAGCTTCCTGTTGCGAACTCGCTTATAGACACGTATGCCAAGTCGGGGAACATTCAATATTCAAGAAACATCTTTGATGGCATGTTGTCGAAAGATATTATCACCTGGAATTCAATTATTGCAGGATATACTTTACATGGTTGCTCAGATGCTGCATTTCATTTGTTTGATCAGATGAAAAGGTTTGGAATTAGGCCGAACCGAGGTACACTGGCTAGTATTATGTATGCCTGTGGCATTGCTGGGATGGTCGACAGGGGACGACATGTTTTTTCTAGCATCACTGAAGAACATCAAATTCTGCCAACTTTAGATCATTATTCGGCTATGGTTGATCTTTATGGACGTTCTGGAAGGCTTACCGATGCAATCGAGTTCATCGAAAACATGCCTACAGAACCTGATGTCTCCATCTGGACCAGTCTACTGACTGCCTCGAGGTTTCATGGGAACTTACACTTGGCAGTACGAGCAGCTGAGCGCCTACTTGAATTGGAGCCTGATAATCATGTGATTTACCGTTTATTAATACAGGCATATGCTTTATATGGGAAATCTGAACAAGCTTTAAAAGTGAGAAAGCTTGGAAGAGAGAGTGCAATGAAGAAATGTACAGCACAGTGCTGGGTTGAAGTCGGTAACAAAGTCTATTTTTTCGTCAATGACGATCATTCCAAAGTCGACGTTCTAAATACTTGGATACAAGGCATTGTAGGGAAAGTAAAGAAATTTAATAATCACCATCAGCTTTCTATCGATGACGAACCGAAGGAAGAAAAAATTGGCGGGTTCCACTGTGAAAAGTTTGCATTTGCTTTTGGCCTTATTGGGTCGTCTCACAAACCGAAAAGAATAAAAATCGTGAAAAACTTGAGAATATGTGGAGACTGTCATCAGATGGCCAAGTATGTCTCAGAGGCTCATGGATGTGAAATATATCTAAGTGACTCAAAATGCCTGCACCATTTCAAAAATGGCTGTTGTTCTTGTGGGGATTATTGGTAG 2673 40.85 MEKLAIPCQTKPPISVPASIIKTKPLKFSSKPTQTTIFFTQKTSSKSNDDHLSYLCRHGLLREAIAAIDSMSRHGSKLSTNTYINLLQTCIDADSIEVGRELHVRLCLVDQVNPFVETKLVSMYAKCGFLKDARKVFDEMLERNLYTWSAMIGGYSREQRWTEVVELFFLMMGDGVLPDAFLFPRILQACGNCEDLETLKLMHSVVIRCGLSCSMRVSNSILTALVKCGNLSLARKFFENMDERDEVSWNAIIAGYCRKGHGDEARTLLDTMNDQGFKPGLVTCNILIASYSQLGKCNLVIELKKKMESMGITPDVYTWTSMISGFAQSSRINLALDFFKEMILAGVEPNAVTITSVSSACASLKSLQKGLEIHCLAIKMGIAHQVLVGNSLIDMYSKCGKLEAAHHVFDTILEKDIYTWNSMIGGYCQGGYCGKAYELFMRIRESNVMPNVVTWNVMISGCIHNGDEDQAMNLFQMMENDGEVNPNTASWNSLIAGYHRLGEKNKALAIFRQMQSLNFNPNSVTILSILPVCANVMAEKKIKEIHGCVLRRNLETELPVANSLIDTYAKSGNIQYSRNIFDGMLSKDIITWNSIIAGYTLHGCSDAAFHLFDQMKRFGIRPNRGTLASIMYACGIAGMVDRGRHVFSSITEEHQILPTLDHYSAMVDLYGRSGRLTDAIEFIENMPTEPDVSIWTSLLTASRFHGNLHLAVRAAERLLELEPDNHVIYRLLIQAYALYGKSEQALKVRKLGRESAMKKCTAQCWVEVGNKVYFFVNDDHSKVDVLNTWIQGIVGKVKKFNNHHQLSIDDEPKEEKIGGFHCEKFAFAFGLIGSSHKPKRIKIVKNLRICGDCHQMAKYVSEAHGCEIYLSDSKCLHHFKNGCCSCGDYW 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1151708 1154380 - CmaCh05G002710.1 Cma05g00271 294389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00271 890 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 385 451 - -
Cma05g00271 890 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 485 522 - -
Cma05g00271 890 PANTHER BNAA06G13890D PROTEIN 485 522 - -
Cma05g00271 890 Pfam PPR repeat 219 244 IPR002885 -
Cma05g00271 890 Pfam PPR repeat 662 687 IPR002885 -
Cma05g00271 890 Pfam PPR repeat 282 312 IPR002885 -
Cma05g00271 890 Pfam PPR repeat 120 144 IPR002885 -
Cma05g00271 890 Pfam PPR repeat 146 176 IPR002885 -
Cma05g00271 890 Pfam PPR repeat 55 75 IPR002885 -
Cma05g00271 890 PANTHER BNAA06G13890D PROTEIN 521 877 - -
Cma05g00271 890 Pfam E motif 705 767 IPR046848 -
Cma05g00271 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Cma05g00271 890 Gene3D Tetratricopeptide repeat domain 200 310 IPR011990 GO:0005515
Cma05g00271 890 PANTHER BNAA06G13890D PROTEIN 385 451 - -
Cma05g00271 890 SUPERFAMILY HCP-like 384 520 - -
Cma05g00271 890 Gene3D Tetratricopeptide repeat domain 108 198 IPR011990 GO:0005515
Cma05g00271 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Cma05g00271 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Cma05g00271 890 Gene3D Tetratricopeptide repeat domain 480 547 IPR011990 GO:0005515
Cma05g00271 890 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 49 382 - -
Cma05g00271 890 TIGRFAM PPR: pentatricopeptide repeat domain 317 351 IPR002885 -
Cma05g00271 890 TIGRFAM PPR: pentatricopeptide repeat domain 119 145 IPR002885 -
Cma05g00271 890 TIGRFAM PPR: pentatricopeptide repeat domain 282 316 IPR002885 -
Cma05g00271 890 TIGRFAM PPR: pentatricopeptide repeat domain 247 279 IPR002885 -
Cma05g00271 890 TIGRFAM PPR: pentatricopeptide repeat domain 146 180 IPR002885 -
Cma05g00271 890 TIGRFAM PPR: pentatricopeptide repeat domain 490 522 IPR002885 -
Cma05g00271 890 TIGRFAM PPR: pentatricopeptide repeat domain 418 452 IPR002885 -
Cma05g00271 890 TIGRFAM PPR: pentatricopeptide repeat domain 590 623 IPR002885 -
Cma05g00271 890 TIGRFAM PPR: pentatricopeptide repeat domain 453 487 IPR002885 -
Cma05g00271 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Cma05g00271 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Cma05g00271 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Cma05g00271 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 143 IPR002885 -
Cma05g00271 890 SUPERFAMILY TPR-like 669 750 IPR011990 GO:0005515
Cma05g00271 890 Gene3D Tetratricopeptide repeat domain 560 775 IPR011990 GO:0005515
Cma05g00271 890 Gene3D Tetratricopeptide repeat domain 330 479 IPR011990 GO:0005515
Cma05g00271 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Cma05g00271 890 PANTHER BNAA06G13890D PROTEIN 49 382 - -
Cma05g00271 890 Pfam DYW family of nucleic acid deaminases 807 890 IPR032867 GO:0008270
Cma05g00271 890 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Cma05g00271 890 Pfam PPR repeat family 486 532 IPR002885 -
Cma05g00271 890 Pfam PPR repeat family 415 462 IPR002885 -
Cma05g00271 890 Pfam PPR repeat family 245 279 IPR002885 -
Cma05g00271 890 Pfam PPR repeat family 314 362 IPR002885 -
Cma05g00271 890 Pfam PPR repeat family 587 633 IPR002885 -
Cma05g00271 890 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 521 877 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00271 - - - cmos:111462963 1775.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00271 Cma-Chr5:1151708 Cma10g00273 Cma-Chr10:1214871 1.39E-14 dispersed
Cma05g00476 Cma-Chr5:2242261 Cma05g00271 Cma-Chr5:1151708 4.23E-96 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1013 . . . . . . . . Cmo05g00276 . . . . . . . . Bhi04g00208 . . . . . . . . . . . . . . . . Cone20ag0115 . . . . . . . . . . . . . . . . Cma05g00271 Car05g00224 . Cpe11g00224 . . . . . . . . . . . . . . . . Csa02g02091 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00271 Cma_Chr05 FPKM 0.353909 0.334902 3.343724 2.808349 11.365398 9.406816 14.59459 1.149662 0.885326 1.474446