Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00273 ATGCGTCTTTATTCATCGCTTCATTTTCAAATTCAGGGACGACTTTTGCAGGACACCGATTTTTTGTTTGAACCAATGGCTGCAGAAGGACAAGCGATTGTGGTTCGTAAGGTTGACGAATTCGATGCGCTTGTTAAGCAAGGAAGCGAGGCTGGTAAACTGATTGTGGTGGATTTTACTGCTTCCTGGTGCCCGCCATGCCGTTTCATTGCTCCAGTATTCGCAGAGATGGCTAAGGCGCACAGCAATGTCGTTTTCCTGAAAGTGGACGTCGATGACTTAAAAGAAATTGCTCAAAAGTTCGAGGTTACGGCAATGCCGACCTTTGTTTTCCTGAAAGGAGGGGCGGAAGTTTACAGGATTGTGGGTGCTGACAAAGTGGAGCTGGGGAAGAAATGGGGCAATGGAACAATTTATTCCTAG 423 46.57 MRLYSSLHFQIQGRLLQDTDFLFEPMAAEGQAIVVRKVDEFDALVKQGSEAGKLIVVDFTASWCPPCRFIAPVFAEMAKAHSNVVFLKVDVDDLKEIAQKFEVTAMPTFVFLKGGAEVYRIVGADKVELGKKWGNGTIYS 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1157654 1159176 - CmaCh05G002730.1 Cma05g00273 294391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00273 140 PANTHER THIOREDOXIN 26 130 - -
Cma05g00273 140 CDD TRX_family 39 128 - -
Cma05g00273 140 Pfam Thioredoxin 34 126 IPR013766 -
Cma05g00273 140 SUPERFAMILY Thioredoxin-like 22 126 IPR036249 -
Cma05g00273 140 ProSitePatterns Thioredoxin family active site. 56 74 IPR017937 -
Cma05g00273 140 Gene3D Glutaredoxin 20 135 - -
Cma05g00273 140 PANTHER THIOREDOXIN 26 130 - -
Cma05g00273 140 PRINTS Thioredoxin family signature 63 72 - -
Cma05g00273 140 PRINTS Thioredoxin family signature 55 63 - -
Cma05g00273 140 PRINTS Thioredoxin family signature 102 113 - -
Cma05g00273 140 ProSiteProfiles Thioredoxin domain profile. 14 140 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00273 K03671 trxA; thioredoxin 1 - thj:104814155 135.191
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00273 Cma09g00130 CCT
Cma01g01935 Cma05g00273 CCT
Cma05g00273 Cma09g00130 ECH
Cma01g01935 Cma05g00273 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00273 Cma-Chr5:1157654 Cma12g00439 Cma-Chr12:2293396 1.77E-43 dispersed
Cma05g00272 Cma-Chr5:1155062 Cma05g00273 Cma-Chr5:1157654 3.29E-35 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1017 . . . . . . . . Cmo05g00278 . Cma01g01935 Cma09g00130 Car01g01512 . . Cpe06g00089 . Bhi04g00210 . . . Hepe10g0603 . . Cla08g01455 Cam08g1940 Cec08g1514 Cco08g1653 Clacu08g1630 . Cre08g1416 Cone4ag1941 . . Cone20ag0114 Lsi04g01706 Csa03g04245 . Cme03g01918 . . . Bda01g01515 Bpe02g01711 . Bma01g00744 . . Cmo01g01998 Cmo09g00127 . Cma05g00273 Car05g00226 Car09g00116 Cpe11g00226 Cpe02g00101 . . . . . . . Cla05g01907 Cam05g2044 Cec05g2053 Cco05g2107 Clacu05g2036 Cmu05g1915 Cre05g2037 Lsi08g01361 Csa02g02094 Chy03g01421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002761 0 2 0 0 0 2 4 2 2 2 2 2 3 2 2 3 2 0 3 2 3 1 3 2 2 3 2 2 3 0 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00273 Cma_Chr05 FPKM 482.087158 548.790222 226.803604 224.675735 145.869797 151.313507 129.185593 73.068878 79.757919 70.307274