Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00274 ATGGACACGATTTATTCAATTCTTCTTGCCAAGTATCATCCACATCCCTCCGCCGGCCACGTTTCATCCTCCTCCCACTTTCTCGCTCTAACTCCAATTCTTTTATACCCGCCCTCCATTCACATCCCCCTTGCAAGCTCCTCATCCATGTTGAAATCAAGCAAGCAAGTTAAAAGGTCCCCTTCCACTTCCCATGCCACTTCTAGAAAGGGCTGTATGAGAGGCAAAGGAGGCCCCGAAAACGCTTCCTGCACTTATAAAGGCGTGCGCCAGAGGACATGGGGCAAATGGGTTGCTGAAATTCGAGAGCCCAATCGCGGGGCTCGTCTCTGGCTTGGCACGTTCGACACATCCCATGATGCCGCTATGGCTTATGACAATGCCGCTCGGCGTCTTTATGGCTCTGACGCCAAACTCAATCTCCCTCATCTTTCCCCCAATTTGCAGCACCATCCTCTGCTTCTTCCTGTCTCTGTTTCCTCTTCCTCCGACAGTGCGGCTGCCACGGTGGAAGATGTCGGGTCCATCAGCTCAGTTCCCCATGACAACAGTAGCAGGATGAGATTTGGGGAGGAGGAGGAGGAGGAGGAGATTGGGGGGCTTTGGAAATCGATGAGTATTAGCTTGGATGATTCCATTTGGGCTGAAGCAGCCATGTCTTTGGATTTTCCTGTCATGGAAGATCGGGATCGTCAAGGCGATTTTGCTGCTGATTTTGTGGATTCTAATGGATGGGATACTCTTCAATGGTGTTCTTGA 759 50.99 MDTIYSILLAKYHPHPSAGHVSSSSHFLALTPILLYPPSIHIPLASSSSMLKSSKQVKRSPSTSHATSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAAMAYDNAARRLYGSDAKLNLPHLSPNLQHHPLLLPVSVSSSSDSAAATVEDVGSISSVPHDNSSRMRFGEEEEEEEIGGLWKSMSISLDDSIWAEAAMSLDFPVMEDRDRQGDFAADFVDSNGWDTLQWCS 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1160764 1161522 + CmaCh05G002740.1 Cma05g00274 294392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00274 252 MobiDBLite consensus disorder prediction 52 84 - -
Cma05g00274 252 Pfam AP2 domain 85 134 IPR001471 GO:0003700|GO:0006355
Cma05g00274 252 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Cma05g00274 252 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Cma05g00274 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 63 251 - -
Cma05g00274 252 MobiDBLite consensus disorder prediction 52 69 - -
Cma05g00274 252 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Cma05g00274 252 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Cma05g00274 252 Gene3D AP2/ERF domain 85 143 IPR036955 GO:0003700|GO:0006355
Cma05g00274 252 SUPERFAMILY DNA-binding domain 85 143 IPR016177 GO:0003677
Cma05g00274 252 CDD AP2 84 144 IPR001471 GO:0003700|GO:0006355
Cma05g00274 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 63 251 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01938 Cma05g00274 CCT
Cma05g00274 Cma12g00437 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00323 Cma-Chr3:4040777 Cma05g00274 Cma-Chr5:1160764 3.39E-32 dispersed
Cma05g00274 Cma-Chr5:1160764 Cma06g00077 Cma-Chr6:423984 6.49E-37 dispersed
Cma01g01938 Cma-Chr1:12583784 Cma05g00274 Cma-Chr5:1160764 9.22E-60 wgd
Cma12g00437 Cma-Chr12:2284706 Cma05g00274 Cma-Chr5:1160764 5.78E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35036 PF00847 AP2 3.20E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00274 - - cpep:111805867 449.514