Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00275 ATGGCGGACACAGGCTCCGTCTCCGACAGGAGAATGTCGTGTTCTATCCCCGAGAGGTTCCAGCTCCATGCTGCCATGTTAGCCTTGCAATTCGGCTATGCCGGCTTTCATGTCGTCTCTAGAGCTGCCCTCAATATGGGCATTAGTAAACTCGTCTTCCCTGTCTACCGAAACGTCATCGCTTTGCTCCTCCTCCTTCCCTTTGCTTATTTCCTTGAAAAGAAGGATAGGCCTGCACTCACTCTTAACTTTGTCCTTCAGTTCTTCCTGCTCGCTCTCGTTGGAATTACAGCCAATCAAGGGTTTTACTTGCTGGGTTTGGACAATACTTCCCCAACCTTTGCTTCTGCTATTCAGAATTCTGTCCCTGCCATTACTTTCCTCATGGCTGCGCTTCTCAGGATTGAACAAGTGAGACTGAACCGGAAAGATGGGATAGCAAAGGTGATGGGGACTATATGTTGTGTGGCCGGAGCAACGGTCATCACATTATACAAAGGGCCGACCATCTACAGCCCGGCGACTACTATGACGGTGCAGGGGACAGCGGAGACGGCGGGGATGCTGATGGGGCCGGGAATGTTCCCGTCACTAGGCGATGCAAAGGGGAAAAGCTGGACCTTAGGGTGCGTGTACTTGATCGGGCACTGCTTGTCGTGGTCCGCGTGGCTAGTCTTGCAAGCACCGGTGCTGAAAAAATACCCAGCTCGCCTCTCCGTCACGTCCTTTACTTGCTTCTTTGGCCTCATCCAATTCTTCATTATCGCCGCCGTGTTCGAGCGCGACGCTCAGGCTTGGCTCTTCCACTCCGGCGCCGAAGCCTTTAGCATCGTTTATGCGGGGGTGGTGGCTTCGGGGATAGCGTTTGCCGTACAAATATGGTGCATTGACAGAGGTGGCCCGGTCTTCGTTGCTGTCTACCAACCGGTTCAGACCTTCGTTGTCGCTCTCATGGCTTCCTTCGCCTTGGGCGAGGAGTTCTACTTGGGAGGGATCATAGGAGCTGTGCTGATTATATCAGGACTGTACCTTGTACTGTGGGGCAAGAGCGAGGAAAAGAAGTTCTTATTGGAAAGGGCAGTGATCCAGTCTGTCCCGGACCATGGTACTCGCAGGCCAAGTGGCCACATCAAACCGTCCCTTAACCAGCCACTTCTCCATCCTACGGCTGACAGTGTTTGA 1182 53.21 MADTGSVSDRRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFLEKKDRPALTLNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPATTMTVQGTAETAGMLMGPGMFPSLGDAKGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLIQFFIIAAVFERDAQAWLFHSGAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIISGLYLVLWGKSEEKKFLLERAVIQSVPDHGTRRPSGHIKPSLNQPLLHPTADSV 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1163426 1166221 - CmaCh05G002750.1 Cma05g00275 294393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00275 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Cma05g00275 393 Pfam EamA-like transporter family 26 163 IPR000620 GO:0016020|GO:0016021
Cma05g00275 393 Pfam EamA-like transporter family 208 346 IPR000620 GO:0016020|GO:0016021
Cma05g00275 393 PANTHER WAT1-RELATED PROTEIN 14 368 IPR030184 GO:0016021|GO:0022857
Cma05g00275 393 MobiDBLite consensus disorder prediction 366 393 - -
Cma05g00275 393 PANTHER WAT1-RELATED PROTEIN 14 368 - -
Cma05g00275 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 350 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00275 Cma09g00126 CCT
Cma05g00275 Cma09g00126 ECH
Cma05g00275 Cma12g00435 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00275 Cma-Chr5:1163426 Cma15g01342 Cma-Chr15:8415672 6.60E-82 dispersed
Cma09g00766 Cma-Chr9:3694122 Cma05g00275 Cma-Chr5:1163426 2.19E-75 dispersed
Cma11g00295 Cma-Chr11:1465378 Cma05g00275 Cma-Chr5:1163426 5.91E-145 transposed
Cma12g00435 Cma-Chr12:2275723 Cma05g00275 Cma-Chr5:1163426 0 wgd
Cma05g00275 Cma-Chr5:1163426 Cma09g00126 Cma-Chr9:547880 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00275 - - csv:101210562 715.687