Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00279 ATGCAGGTTCGTGATGCGTATCCATTTGGTGTGGATCCGAAGTGGCAAGGCACTCTAAGAGTAGCTCAAATGAACAGAGGAATTATATTGAGCCACTTCAAAGCAAAATTCTTTGGAGAAAACATTAACATCTGGTACCAATTTGTTCCACAGATGATTTTCATGAACAGTTTATGCGGTTACCTCTCACTTCTCATAATCGTAAAGCGGTGCTCTGGATCTCAAGCTCTGTATCACTTTCTAAAACAGCTTCCTATCTACACGCCTATGGGCCCTCGGTCACTCAGCCAAGCGCATTCGGAGTTCTCGAGTGTATTTTACGACAAGGTTCTGCTCCTAGCTTGGGGGTTCAATAGTTTGATCATCCGAATGGTGTAG 378 43.92 MQVRDAYPFGVDPKWQGTLRVAQMNRGIILSHFKAKFFGENINIWYQFVPQMIFMNSLCGYLSLLIIVKRCSGSQALYHFLKQLPIYTPMGPRSLSQAHSEFSSVFYDKVLLLAWGFNSLIIRMV 125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1187764 1189881 - CmaCh05G002790.1 Cma05g00279 294397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00279 125 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 94 125 - -
Cma05g00279 125 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 2 81 - -
Cma05g00279 125 PANTHER VACUOLAR PROTON ATPASES 94 125 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cma05g00279 125 PANTHER VACUOLAR PROTON ATPASES 2 81 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cma05g00279 125 Pfam V-type ATPase 116kDa subunit family 5 75 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00279 K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a - pop:7490678 122.864
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00279 Cma12g00431 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00279 Cma-Chr5:1187764 Cma20g00461 Cma-Chr20:2208366 2.72E-08 dispersed
Cma11g01088 Cma-Chr11:5976677 Cma05g00279 Cma-Chr5:1187764 9.24E-06 wgd
Cma12g00431 Cma-Chr12:2249053 Cma05g00279 Cma-Chr5:1187764 2.82E-08 wgd
Cma19g00683 Cma-Chr19:7079317 Cma05g00279 Cma-Chr5:1187764 2.03E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1033 . . . . . . . . Cmo05g00282 Cmo12g00383 . . . Car12g00408 . . Cpe07g00387 Bhi04g00220 . . . . . . Cla08g01448 Cam08g1932 Cec08g1506 Cco08g1644 Clacu08g1622 . Cre08g1408 . . Cone17ag1375 Cone20ag0107 . . . Cme03g01909 Blo17g00765 . Bda08g01248 . . Bpe05g00122 . Bma05g00148 . . . Cma12g00431 Cma05g00279 Car05g00230 . Cpe11g00231 . . . . . . . . . . . . . . . Lsi08g01352 Csa02g02102 Chy03g01413 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00279 Cma_Chr05 FPKM 0.0 0.0 0.0 0.0 0.843291 0.0 0.360275 0.0 0.0 0.0