Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00281 ATGGCTGGGTTCTTCTATCTAGGAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAAAACTTGTTTATGTATAGAAATGAAGAGATCTACAACAAGGGTTTCGAGATATGGCCTCAACAATACACCAATCATCACCAGAATCCTTCTCTTACAGACCATTTATCCTTCGGCGTTGGTCCCAGCCGCCGCAGCTTCATGATCAACGACTCCGATGAGCCATCCAGATCAGCCTTCACCGTCATGCGCCCTGCCGCTGCCTTTGCTGCATCTGCTGCTGCCGCTGCCGCTGGTGGAGGCATGAATTGTCAAGACTGTGGCAACCAAGCTAAGAAGGACTGCGCTTATTTGCGGTGCAGGACTTGCTGTAAGAGCCGCGGCTTTCAGTGTCAGACCCATGTCAAAAGCACTTGGGTTCCGGCTGCCAAACGCCGTGAACGCCAGCAGCAAATTGCTGCCTTACAACAACAACAGCAACAAGAACAGTTTCGTGGTGGGGAGAATTCTAAAAGACAGAGAGAAACTCAGATTACCACCACTGTCTCTGCCGCCACCGCCTCCGCCACCGCTTGCCCTCGTTTGCCCTCCATCACGTCAGGGTTAGAACTGGCGCAATTCCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGCGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAACATCGGTGGTCATGTGTTCAAAGGAATTCTCTACGATCAAGGCCCTGAAGTCCGTTACACCGCAGCCGGTGAAAGCTCCTCCGGTCACGGTGGAGATGGATCAACACACCCACTTAACCTAATTGCCGGATCCTCCAACGCCGGACCCACTTCCGCATCTACCTCCGCCGCAACTAGTACCAACCCCTCCGCCGCCGCCCCGTTGCTCGACCCTACGATATATCCAGCTCCTCTCAATGCATTCATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 1014 52.66 MAGFFYLGGGREGPPNKQEEEEEREQNLFMYRNEEIYNKGFEIWPQQYTNHHQNPSLTDHLSFGVGPSRRSFMINDSDEPSRSAFTVMRPAAAFAASAAAAAAGGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQEQFRGGENSKRQRETQITTTVSAATASATACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPEVRYTAAGESSSGHGGDGSTHPLNLIAGSSNAGPTSASTSAATSTNPSAAAPLLDPTIYPAPLNAFMAGTQFFPPSRS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1203604 1204975 - CmaCh05G002810.1 Cma05g00281 294399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00281 337 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 334 - -
Cma05g00281 337 MobiDBLite consensus disorder prediction 271 308 - -
Cma05g00281 337 Pfam Domain of unknown function (DUF702) 106 260 - -
Cma05g00281 337 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 334 IPR007818 GO:0003700|GO:0006355
Cma05g00281 337 MobiDBLite consensus disorder prediction 264 308 - -
Cma05g00281 337 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 108 150 IPR006510 -
Cma05g00281 337 MobiDBLite consensus disorder prediction 1 23 - -
Cma05g00281 337 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 211 259 IPR006511 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01939 Cma05g00281 CCT
Cma01g01939 Cma05g00281 ECH
Cma05g00281 Cma12g00430 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00281 Cma-Chr5:1203604 Cma19g00283 Cma-Chr19:2141068 7.26E-95 dispersed
Cma01g01939 Cma-Chr1:12590607 Cma05g00281 Cma-Chr5:1203604 6.90E-93 wgd
Cma12g00430 Cma-Chr12:2242402 Cma05g00281 Cma-Chr5:1203604 5.62E-124 wgd
Cma03g00708 Cma-Chr3:5754845 Cma05g00281 Cma-Chr5:1203604 1.68E-85 wgd
Cma05g00281 Cma-Chr5:1203604 Cma07g00452 Cma-Chr7:1973447 4.40E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35037 PF05142 DUF702 8.80E-68 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00281 - - cmo:103488016 516.924