Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g00283 | ATGAAGATTCTGTGTGATGTCTGCGAAAATGGGGAAGCGGTGGTGTTCTGCACGGCGGACGAGGCGGCGCTCTGTAATTTATGCGATCACCGTGTCCACAATGCTAATAAGCTTGCTTCGAAGCACCGCCGCTTTTCTCTGCTCCGCCCTGATGCGGCGGAGGCCCCTGTCTGCGATGTGTGCCGGGAGCGGCGAGGGTTCTTGTTCTGTCAGCAGGATAGAGCGATTCTATGTAGAGAATGCGATGATCCAATTCATTCGGCCAACGAGCTCACTATGAAGCACGATAGGTTTCTTCAGATTGGGATTAAGCTTTCCGCCACCGCTACTCTGTACGAACCGCCTCCCTCCGGGGAGAAACCGATTGGGAGTGGTGGTCGTGTTGTTTCTAAATCTAAATTAAAGGGCTCTGTCAAGAAGGGGGCTGCTGTTTCTAGTGATCCAACGGTATGCACAACAAGTGTTTGTGTAAATGCCCCAATGAACTTAACTCCGACGATAGCCGTGAACAAGGGCAGTGGAGGTCAGATTGCGACTGAGGACAGTGGATCAGCTAGTAGCATATCGGAATATTTGATGGAGACGCTTCCTGGGTGGCCGTTTGAAGAATTTCTGGAGTTTGAAGGGGTGGGGTTTCCATTTTCATCATCGGAACGCTTGGAGCCTTGGGTCCCTCAGGGGCCACCAGCGGCGCTGTTTGGGTTGAAGGACACCAAGGCATTGGCAGTAAATTCATCAAAAGTCAATAGAGTGTGGACAGACGATGGTTTCACTGTGCCACAGATTATTAGTACAGCCCCGTCTGCAGGCTTTAAGAGGTCCAGACCTTTTTCATAA | 837 | 51.14 | MKILCDVCENGEAVVFCTADEAALCNLCDHRVHNANKLASKHRRFSLLRPDAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLQIGIKLSATATLYEPPPSGEKPIGSGGRVVSKSKLKGSVKKGAAVSSDPTVCTTSVCVNAPMNLTPTIAVNKGSGGQIATEDSGSASSISEYLMETLPGWPFEEFLEFEGVGFPFSSSERLEPWVPQGPPAALFGLKDTKALAVNSSKVNRVWTDDGFTVPQIISTAPSAGFKRSRPFS | 278 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1210628 | 1211983 | + | CmaCh05G002830.1 | Cma05g00283 | 294401 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g00283 | 278 | CDD | Bbox1_BBX-like | 4 | 47 | - | - | |
| Cma05g00283 | 278 | PANTHER | B-BOX ZINC FINGER PROTEIN 21 | 1 | 209 | - | - | |
| Cma05g00283 | 278 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270 | |
| Cma05g00283 | 278 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
| Cma05g00283 | 278 | CDD | Bbox1_BBX-like | 57 | 99 | - | - | |
| Cma05g00283 | 278 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270 | |
| Cma05g00283 | 278 | Pfam | B-box zinc finger | 54 | 96 | IPR000315 | GO:0008270 | |
| Cma05g00283 | 278 | Pfam | B-box zinc finger | 4 | 44 | IPR000315 | GO:0008270 | |
| Cma05g00283 | 278 | Gene3D | Classic Zinc Finger | 1 | 94 | - | - | |
| Cma05g00283 | 278 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 209 | - | - | |
| Cma05g00283 | 278 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma01g01945 | Cma05g00283 | CCT | |
| Cma01g01945 | Cma05g00283 | ECH | |
| Cma05g00283 | Cma12g00429 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g00283 | Cma-Chr5:1210628 | Cma16g00426 | Cma-Chr16:2125173 | 5.29E-35 | dispersed | |
| Cma01g01945 | Cma-Chr1:12606514 | Cma05g00283 | Cma-Chr5:1210628 | 3.57E-58 | wgd | |
| Cma11g01083 | Cma-Chr11:5944389 | Cma05g00283 | Cma-Chr5:1210628 | 1.06E-58 | wgd | |
| Cma12g00429 | Cma-Chr12:2230092 | Cma05g00283 | Cma-Chr5:1210628 | 1.13E-144 | wgd | |
| Cma19g00687 | Cma-Chr19:7115841 | Cma05g00283 | Cma-Chr5:1210628 | 1.01E-56 | wgd | |
| Cma20g00817 | Cma-Chr20:3862961 | Cma05g00283 | Cma-Chr5:1210628 | 2.24E-50 | wgd | |
| Cma03g00703 | Cma-Chr3:5739510 | Cma05g00283 | Cma-Chr5:1210628 | 3.11E-23 | wgd | |
| Cma05g00283 | Cma-Chr5:1210628 | Cma07g00442 | Cma-Chr7:1941184 | 3.31E-24 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35038 | PF00643 | zf-B_box | 1.70E-05 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g00283 | - | - | cmax:111492300 | 542.347 |