Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00286 ATGACCATAAATCGTCTGCGGATTTCGAGCTCATTTGCGAGGATGGCTGAGGAGATCAGTAAGGCAGAACTCAGAACTGCCACTTCTGCTGCAGAGAAGGCGCAATCGAGATCTCTTTGGCCCTCTGTTCTCCGTTGGATTCCCACGTCGACCGATCATATTATCGCCGCCGAGAAGCGACTTCTCTCTCTTGTCAAAACTCCCTTTGTCCAAGAACGGGTTAACATTGGTTCTGGCCCGCCAGGAACGAAAACTAGGTGGTTTTGTTCTTCGAGTGATGAACCTAGATATATCAACACCGTGACATTCGAAAGCAAAGCTGAGTCTCCGACTCTTGTAATGATTCATGGTTATGCTGCTTCTCAAGGGTTCTTCTTCCGGAATTTTGATGCTCTTGCCAGTCGCTTCCGGGTCATTGCCGTCGATCAACTTGGGCCATCTGGGGTAATCCATGTTTTATTCCTTCGCTGTGATTTGTGCTCATCGTTTGATAAGCCTTCTATTAAGTGGGGAGGGTCTAGCAGGCCCGATTTTACATGCAAAAGCACAGAAGGTTCTGATTCTTATGTTCACGATGCAGAAACTGAAGCATGGTTTATAGATTCTTTTGAGGAGTGGCGAAAAGCAAAAAGCATCAGCAATTTTGTTTTACTTGGACACTCATTTGGTGGATATGTTGCGGCTAAATATGCTCTCAAGCATCCTGAGCACGTCAAGCACCTAATTTTAGTTGGACCTGCTGGATTTTCTTCGGAGTCGGAGGTGAAGTCTGAGCGGCTTACACAGTTTAGAGCTACTTGGAAAGGAGCGGTTTTGAATCATTTGTGGGAGTCAAATTTTACTCCACAGAAGCTTGTTAGAGGTTTGGGCCCTTGGGGTCCAGATCTTGTTCGCAAATATACAAGTTCGAGGTTCGGGACATACTCAATTGGGGACATATTGAATGATGAAGAATCCAGATTGTTATCAGATTATGTATATCATACGTTAGCAGCTAAGGCTAGTGGAGAATTGTGCTTGAAATACATATTTGCATTCGGTGCGTTTGCTCGGATGCCACTTCTACAGAGTGCATCTGAATGGAAAGTTCCTACAACATTTATATACGGTTATGAAGATTGGATGAACTATCAAGGCGCTCAAGAAGCTCGCAAAAGTATGAACACACCGTGCGAAATACTACGCGTTCCTCAGGCTGGTCACTTTGTGTTCATAGACAGCCCTAGCAGTTTTCACTCGTCAGTGTTCTATGCGTGCCGAAGATTCCTCTCTCCCGAACCCGAGAAAGAATCCTTGCCAGAAGAGATCACTGAAGAAGAAGAAGCCTTGTCTTCGCTCCGCCGGAGAATACGCATTCCGATGGAAACAATGTCGAGCTATATAACCACTGGTCTTTACAGCCGCTCACCTTTCACATTTCCACGCCTTAAACCACGACGTCTCAACCACTCCGGCGGGGGTAGCGTCTCCGTAAACTGCGTTGCTAGCAAATGGGCTGAGCGACTACTTGGAGATTTTCAATTCCTCTCCGGTTCCTCCTCCACCGTCACTCTCTCCCCTTCTTTCCCTCCTCATATTGCCTCCCCCGAGCGCCATGTTACAATCCCCATCCATTTCTATCGAGTTCTTGGAGCTGAGACGCATATTATTGGGGATGTGATTTGTAGAGCTTACGAAGCTAGAGTTTCGAAGCCGACGCAGTATGGGTTTAGGCAGGACACTCTGATAAGTCACCGGCAGATTCTTCAGGCAGCTTGCGAAACCTTGGCGGATCGTACTTCGCGAAGAGAGTACAATAAAGGCCTTTCGGAAGATGAAGATGGCACCATTCTCACGCAAGTTCCTTTCGATAAGGTTCCTGGTGCTTTGTGTCTGTTGCAAGAAGCTGGAGAGACAGCATTGGTTCTTGAAATTGGAGAGAGCTTGCTCAGAGAGAGGCTGCCAAAGTCATTCAAGCAAGATATTGTCCTGGCCGTGGCTCTTGCTTATGTTGACATATCAAGGGATGCTATGACATTATCTCCTCCTGATTTTATTCAGGGCTGCGAAGTGCTCGAGAGGGCCTTGAAGTTGTTGCAGGAGAGTGCTAGTCGCCTTGCACCTGATTTGCTTTCACAAATTGATGTGACATTGGAAGAGATCACACCTCGATGTGTTCTGGAACTGTTAGCTTTGCCTCTCGATGAGTGGCGAAAAAGAAGGGTAGAGGGTCTTCATGGAGTGCGCAATATTTTGTGGGCTGTTGGAGATGGGGGAGCAACAGCTATTGCTGGTGGATTCACCCGTGAAGAATTTATGAATGAGGCATTTGAACGAATGACAGCATCTGAGCAGGTTGATCTCTTTGTAGCTACACCAACAAATATTCCTGCAGAATGTTTTGAAGTGTATGGAGTGGCACTTGCACTCGTGGCACAGGCCTTTGTTGGCAAAAAACCGCACCTTATCCAAGATGCTGATGACCTCTTCCGACAACTTCAGCAAACTAAGGAAGCTGTTGTTGGGACTGCTTTCACAGGATATGCACCTCGCAAGGTTCATTTTGCCCTTGAAAGGGGGCTATGTTCCTTACTTTGTGGAGAACTTGATAAGTGTCGATCATGGCTGGGCCTAGATAGTGAGACTTCACCTTACAGAAATCCAGCTATTGTAGATCATATTCTAAATAATTCTGAAAATGATCTTCCGGGGCTATGTAAGCTGTTGGAGATGTGGTTAGCGGAAGTGGTGTTCTCCAGATTTAGAGACACGAAAGACATTTATTTTAAGCTTGGAGATTACTACGATGATCCCACTGTTTTGAGGTACTTAGAGAAACTGGAAGGAGTTAATGGTTCACCACTAGCTGCATCAGCAGCTATAGTGAAGATTGGTACTGAGGCTACTGCAGTTCTTGATCACGTGAAATCCAGTGCTATTCAAGCACTGCGGAAGGTGCCTTTAGTGAGCTTTGATGAGAATGAGAATGAACGTACCAACTTATCTGAGGTTTCTGAGAGAGCTAAAGCTGGCGAAATAAATGATGAAAAACCAATTACTGATCAAATTAAAGATGCAAGTGTGAAGATCATGTGTGCTGGTTTGGCAGTTGGGTTGGTGACTTCGGCTTGTTTGAGGTTCTTACCTGCTAGAAATAGCACAACTCCTCTACTTAAAGAAGCTGGTTCTTCTAGCGCATCAACTACCAGTGTAGCATCTGAAGTTGAAAAGTCCAGCGAGGAGTCGTCTAGAATGGATGCACGGATTGCAGAAGGTCTAGTTCGCAAATGGCAGAGCATTAAGTCTCTGGCTTTTGGACCTGATCATTGCCTAGAAAAACTACAAGAGATATTAGATGGTGAGATGTTGAAGATCTGGACGGATCGTGCAATCGAAATTTCAGAAATCGGTTGGTTCTATGACTACACACTCTCAAATCTAACCATTGACAGTGTAACAGTATCTTTAGATGGCCGGCGTGCCATGGTGGAAGCAACTCTTGAAGAATCAGCTCGTCTCATTGATGTAGGCCATCCAGAACACAATGACTCACACAGAAAATCCTATACAACAAGATATGAGATGTCATATTCCAGTTCTGGATGGAAAATTACCAAAGGTGCCGTTCTTGAATCTTAA 3618 45.44 MTINRLRISSSFARMAEEISKAELRTATSAAEKAQSRSLWPSVLRWIPTSTDHIIAAEKRLLSLVKTPFVQERVNIGSGPPGTKTRWFCSSSDEPRYINTVTFESKAESPTLVMIHGYAASQGFFFRNFDALASRFRVIAVDQLGPSGVIHVLFLRCDLCSSFDKPSIKWGGSSRPDFTCKSTEGSDSYVHDAETEAWFIDSFEEWRKAKSISNFVLLGHSFGGYVAAKYALKHPEHVKHLILVGPAGFSSESEVKSERLTQFRATWKGAVLNHLWESNFTPQKLVRGLGPWGPDLVRKYTSSRFGTYSIGDILNDEESRLLSDYVYHTLAAKASGELCLKYIFAFGAFARMPLLQSASEWKVPTTFIYGYEDWMNYQGAQEARKSMNTPCEILRVPQAGHFVFIDSPSSFHSSVFYACRRFLSPEPEKESLPEEITEEEEALSSLRRRIRIPMETMSSYITTGLYSRSPFTFPRLKPRRLNHSGGGSVSVNCVASKWAERLLGDFQFLSGSSSTVTLSPSFPPHIASPERHVTIPIHFYRVLGAETHIIGDVICRAYEARVSKPTQYGFRQDTLISHRQILQAACETLADRTSRREYNKGLSEDEDGTILTQVPFDKVPGALCLLQEAGETALVLEIGESLLRERLPKSFKQDIVLAVALAYVDISRDAMTLSPPDFIQGCEVLERALKLLQESASRLAPDLLSQIDVTLEEITPRCVLELLALPLDEWRKRRVEGLHGVRNILWAVGDGGATAIAGGFTREEFMNEAFERMTASEQVDLFVATPTNIPAECFEVYGVALALVAQAFVGKKPHLIQDADDLFRQLQQTKEAVVGTAFTGYAPRKVHFALERGLCSLLCGELDKCRSWLGLDSETSPYRNPAIVDHILNNSENDLPGLCKLLEMWLAEVVFSRFRDTKDIYFKLGDYYDDPTVLRYLEKLEGVNGSPLAASAAIVKIGTEATAVLDHVKSSAIQALRKVPLVSFDENENERTNLSEVSERAKAGEINDEKPITDQIKDASVKIMCAGLAVGLVTSACLRFLPARNSTTPLLKEAGSSSASTTSVASEVEKSSEESSRMDARIAEGLVRKWQSIKSLAFGPDHCLEKLQEILDGEMLKIWTDRAIEISEIGWFYDYTLSNLTIDSVTVSLDGRRAMVEATLEESARLIDVGHPEHNDSHRKSYTTRYEMSYSSSGWKITKGAVLES 1205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1222353 1232003 - CmaCh05G002860.1 Cma05g00286 294404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00286 1205 Coils Coil 429 449 - -
Cma05g00286 1205 Pfam ARC6-like, IMS domain 1083 1198 IPR025344 -
Cma05g00286 1205 Pfam alpha/beta hydrolase fold 110 408 IPR000073 -
Cma05g00286 1205 SUPERFAMILY alpha/beta-Hydrolases 99 413 IPR029058 -
Cma05g00286 1205 Gene3D alpha/beta hydrolase 88 417 IPR029058 -
Cma05g00286 1205 PANTHER PLASTID DIVISION PROTEIN CDP1, CHLOROPLASTIC-RELATED 479 1203 IPR044685 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00286 - - - csv:101212436 1229.16
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00286 Cma12g00426 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00894 Cma-Chr1:5154539 Cma05g00286 Cma-Chr5:1222353 7.90E-10 dispersed
Cma05g00286 Cma-Chr5:1222353 Cma09g01189 Cma-Chr9:7535297 7.98E-09 dispersed
Cma12g00426 Cma-Chr12:2206254 Cma05g00286 Cma-Chr5:1222353 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1048 . . . . . . . . Cmo05g00292 Cmo12g00376 . . . Car12g00402 . . Cpe07g00381 Bhi04g00231 . . . Hepe10g0128 . . Cla08g01442 Cam08g1923 Cec08g1498 Cco08g1634 Clacu08g1613 . Cre08g1399 . . Cone17ag1385 Cone20ag0096 . . . Cme03g01901 Blo17g00754 Blo18g00786 Bda08g01233 Bda01g01523 Bpe02g01720 Bpe05g00128 Bma01g00736 Bma05g00154 . . . Cma12g00426 Cma05g00286 Car05g00236 . Cpe11g00237 . . . . . . . . . . . . . . . Lsi08g01344 Csa02g02111 Chy03g01405 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007804 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00286 Cma_Chr05 FPKM 9.608764 10.89675 3.954423 3.60689 5.000886 4.723538 5.191506 4.821371 4.271521 5.092421