Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00287 ATGTCGTCAACGTTTAGCGGTGATGAAACGGCTCCCTTCTTTGGCTTCCTCGGCGCTGCTGCGGCCCTGGTTTTCTCCTGTATGGGAGCCGCTTACGGCACGGCGAAGAGCGGGGTAGGAGTGGCGTCAATGGGAGTGATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCGGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCGAAGGCTAAATCTTATTACCTCTTCGATGGTTACGCCCATCTCTCCTCTGGTCTTGCTTGCGGTCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGCATCGTTGGTGATGCGGGCGTTAGGGCCAATGCACAACAACCAAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTCGCGGAAGCACTTGCCCTTTATGGACTTATTGTTGGTATTATTCTCTCATCCCGAGCTGGTCAGTCAAGAGCTGATTAA 498 50.6 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1233061 1235211 - CmaCh05G002870.1 Cma05g00287 294405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00287 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Cma05g00287 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Cma05g00287 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma05g00287 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma05g00287 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma05g00287 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma05g00287 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cma05g00287 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cma05g00287 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cma05g00287 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Cma05g00287 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cma05g00287 165 Gene3D - 11 162 IPR035921 -
Cma05g00287 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cma05g00287 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00287 Cma12g00425 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01395 Cma-Chr1:9879945 Cma05g00287 Cma-Chr5:1233061 1.95E-112 dispersed
Cma05g00287 Cma-Chr5:1233061 Cma12g00425 Cma-Chr12:2202888 8.28E-112 dispersed
Cma05g00287 Cma-Chr5:1233061 Cma05g00288 Cma-Chr5:1236640 2.70E-107 tandem
Cma12g00424 Cma-Chr12:2199287 Cma05g00287 Cma-Chr5:1233061 2.38E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00287 K02155 - pvy:116145974 288.885