Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00292 ATGGAAGGGAGAAAGGGGAAGAAGGGTTACATGTGGGCAATTTCAGCTGGTCTCAACGCTGCGTTCGCTGCCATTGCCGCCAAGCTTTTCTCCTCTACGTTAATTAGGTATGGACTGGTAATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAACAGCTTAAAAGCTCTCTCGTCATTACAAGCTACAGGGACCAACTTTTCAGCAAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTTCTTGTTCGAAGAAGCATTATCATTTCAGTGGTTTGTAGGTGCCATATTGATTGTAATGGGCGTGCTGATATTGAATCAGTCGAGCATTGAGAAGAAGGAATCAAAGGACTGA 354 44.35 MEGRKGKKGYMWAISAGLNAAFAAIAAKLFSSTLIRYGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEALSFQWFVGAILIVMGVLILNQSSIEKKESKD 117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1253719 1256911 + CmaCh05G002920.1 Cma05g00292 294410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00292 117 SUPERFAMILY Multidrug resistance efflux transporter EmrE 20 110 - -
Cma05g00292 117 Gene3D - 8 112 - -
Cma05g00292 117 PANTHER TRANSMEMBRANE PROTEIN 42 5 116 IPR039632 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00292 - - - csv:101208185 190.274
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1057 . . . . . . . . Cmo05g00297 . . . . . . . . Bhi04g00237 . . . . . . Cla08g01438 . . . Clacu08g1608 . . Cone4ag1955 Cone7ag1867 . . . . . Cme03g01897 . . . Bda01g01527 Bpe02g01723 . Bma01g00732 . . . . . Cma05g00292 Car05g00241 . Cpe11g00241 . . . . . . . . . . . . . . . Lsi08g01339 Csa02g02117 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013944 1 2 0 1 1 0 1 0 0 0 1 0 1 1 1 1 0 2 1 0 1 1 1 0 1 1 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00292 Cma_Chr05 FPKM 9.180616 9.739816 5.761737 5.410247 8.244091 7.782468 9.168879 6.749922 7.191795 7.31694