Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00295 ATGCGAGGATTGCACAAAGGAAAAAGGGTTTCATGGGCGTCAGATCTTAATCTCCGTCAGGTTAGGCTGTTCTTGTCTGAGGACTGTCCTTCCCAAGTGGGATTGGGTGCCCAAGATCACCTTCAAGCAAAGGCATCGTGGCTTTTGCATTCTACTGGATCAGGTTCTGATGACACTTTGCCTCCTGGATTTGAAGTAGCTCATTCAGAGAATCAGTCGCAGATTAAGCTCTCACAGATTCCTGTTAATCAATGGAGATGTCCGCCTAAGTTTGTGCTGAATTTGACGTGGCAAGTGGTTGTTGGTGAAGAAAGCCGAGAGGTAGTTGTTGAAAATCAGAGAGAGATGAGAGTACTTGAAGCGGTTTATCCTCGGCCATCTGCAATTCCTCCTAACCCGTCCGTAGTAGCTGATTCAGAACGTGCCAATGTAGATGACAGTCAAACACCTCTGATTCCCATTACTCCTGTTGAAGACGAAGATGCAACAACCGAGACCTCGTCTGATTACGCAAGCCCCGCCTCTGTCCTTAATACGAGTGCACAGCCCTCCCCATTTACTCCTGCTGGTAGATCCACATCTCAACATGTTTTACTAAATGCGATGTCTTCTACTTCTAGTGTGAGTTCTATGGCTGGAATGGATCTTGGCAACAAACATGATGTTGTAGCTGCTGCATCCGCGGCACTCGGTGCACTTGTGAAGAGCAATGAGATAGGTAACTCGATCGACCGCGAATTACTTGTTAATATTCTCAACAATCCAAAAATGATCGAACAGCTGGTTGTGGATTCTGGTGTTGTCACAAGCACTCAAAAGCCAATATCATCTTCTGACCCACAGCTTGTACATATGCCTATGTCCGAAACCAATGCCACCATGACGCCTCCTTTTTTCTCTCAACCCAATGGAGGGAGTGTAGCACCTGTCCCCAACGCACACCCTTCCTCAAGGGGTGTACCAGTTTCTTCTTCCCTGCCCTCCAATGGAGCCCCATTGAAGGACTTGAATTACTATAAAAGTTTGATTCAGCAACATGGAGGGGAGAGACAGGACGATCCCCCTCGGCAGCAGCAATTCCCGAACCGTCACAACCAACTCTTGGGTACAAACCAAGAGTTCTTACAGAACCAGCCATCAAGAGAAGCAAAGTTCAAGATAATGAAACCCTGCATATATTTTAACAGCCCGAGAGGATGTCGACATGGATCTAATTGTGCGTATCAGCACGATCCCGTGTTCCAGCAGAGAAGTAGTAGCGTATCAGAAATGCCTACTAGCGCCAAGAGAACAAAGATTGATAGAGAAATCAGCAGTTAA 1320 46.74 MRGLHKGKRVSWASDLNLRQVRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGSGSDDTLPPGFEVAHSENQSQIKLSQIPVNQWRCPPKFVLNLTWQVVVGEESREVVVENQREMRVLEAVYPRPSAIPPNPSVVADSERANVDDSQTPLIPITPVEDEDATTETSSDYASPASVLNTSAQPSPFTPAGRSTSQHVLLNAMSSTSSVSSMAGMDLGNKHDVVAAASAALGALVKSNEIGNSIDRELLVNILNNPKMIEQLVVDSGVVTSTQKPISSSDPQLVHMPMSETNATMTPPFFSQPNGGSVAPVPNAHPSSRGVPVSSSLPSNGAPLKDLNYYKSLIQQHGGERQDDPPRQQQFPNRHNQLLGTNQEFLQNQPSREAKFKIMKPCIYFNSPRGCRHGSNCAYQHDPVFQQRSSSVSEMPTSAKRTKIDREISS 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1274429 1278590 + CmaCh05G002950.1 Cma05g00295 294413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00295 439 MobiDBLite consensus disorder prediction 292 327 - -
Cma05g00295 439 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 434 - -
Cma05g00295 439 MobiDBLite consensus disorder prediction 415 439 - -
Cma05g00295 439 ProSiteProfiles Zinc finger C3H1-type profile. 385 413 IPR000571 GO:0046872
Cma05g00295 439 MobiDBLite consensus disorder prediction 166 192 - -
Cma05g00295 439 MobiDBLite consensus disorder prediction 130 192 - -
Cma05g00295 439 SUPERFAMILY CCCH zinc finger 390 423 IPR036855 GO:0046872
Cma05g00295 439 MobiDBLite consensus disorder prediction 292 307 - -
Cma05g00295 439 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 1 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00295 - - - cmax:111492081 830.476
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00295 Cma12g00416 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00295 Cma-Chr5:1274429 Cma07g00446 Cma-Chr7:1953363 6.30E-59 dispersed
Cma12g00416 Cma-Chr12:2161750 Cma05g00295 Cma-Chr5:1274429 0 wgd
Cma03g00697 Cma-Chr3:5716957 Cma05g00295 Cma-Chr5:1274429 9.18E-74 wgd
Cma05g00295 Cma-Chr5:1274429 Cma07g00438 Cma-Chr7:1911458 1.03E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1073 . . . . . . . . . Cmo12g00367 . . . Car12g00394 . . Cpe07g00374 Bhi04g00242 . . . Hepe10g0137 . . Cla08g01436 Cam08g1916 Cec08g1492 . Clacu08g1606 . Cre08g1392 . . Cone17ag1391 . . . . . Blo17g00748 . . . . . . Bma05g00161 . . . Cma12g00416 Cma05g00295 Car05g00244 . Cpe11g00245 . . . . . . . . . . . . . . . Lsi08g01336 Csa02g02120 Chy03g01397 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007937 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 4 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35041 None None None None Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00295 Cma_Chr05 FPKM 15.669114 16.514893 20.898106 17.940311 20.486538 23.295254 22.152908 32.412468 31.006348 30.750168