Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00301 ATGTCGAACGCCGTCGAAGATCTCATCCTTCGCCACCGCCATCGCCACTCTGATTTCCGATTTCATCTCCTTCAATCTCACTCTCAGCATCGCGATATGTCTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTCCAGCTCTTCCGCCTCTTTGTTTACTTCAGTGTCATCGGCCTTTTCCGCCGTCGGATCAGTCCAACGCTTGCAACTTCCGTCATGCTCCCGGCGCACATTCTACAGTTGCTACGCTCGACTTGAAACGAACATATGGTATCAATGACTCTGAGGCCTTGGCTTGTGGACAAGTTGTAGCCTCTGAACAGATGATGCGATCTAATGATTCTTTATGTAAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTTGAGGACTCAAAAATCCGTAGACGAGCCTATTGATGATCCTAATATTTCTACCAACGGTCGGTACGACAGTTCATTAGGATTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTCGAGGGAATAGGGCTTATAGAGAAAACTACGACAAATCATATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTAAACTAAAGGCTGAAGTTAAAAGTTTATATGCAGATGAACATAGACTTGATGAACTTATAAGGATGAAACAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAATCACAGAAAGAACCTTTTTGTAACGGAAGAAGATATCTTGCGAGTTCCTTGTTTCAAGAATCAAACACTCATAGCAGTACAAGCCCCTCAAGCTAGCTGTATTGAGGTGCCTGATCCAGATGAGGAAGCTTGTTTTTCTGAAAGGCAGTGTAGACTGATCATCAAAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGACTGCAAAACAAGGGCTGGAAGAAAATAGTTCCAAGCAAGCGAAACTATCTTCTTCGGTACAGCAGAGGAATCCCAACATACATACCAACAATATTTGTTCTCCTTTCCACGAATTTCATGGAATGCAGAGAATCTTACCTTTATATAATAATATAGACGATGATTATTGGTTCCAATCAAATTCTCAAGTGAGCATTACGCACTTATGGGGTGAGGAACACAACTTTTAA 1251 41.25 MSNAVEDLILRHRHRHSDFRFHLLQSHSQHRDMSSSSSSSSSSSAPALPPLCLLQCHRPFPPSDQSNACNFRHAPGAHSTVATLDLKRTYGINDSEALACGQVVASEQMMRSNDSLCKPVSSANEKQNKKLKLQKNSKLRTQKSVDEPIDDPNISTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGKLKAEVKSLYADEHRLDELIRMKQELLRNLEENANHRKNLFVTEEDILRVPCFKNQTLIAVQAPQASCIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTAKQGLEENSSKQAKLSSSVQQRNPNIHTNNICSPFHEFHGMQRILPLYNNIDDDYWFQSNSQVSITHLWGEEHNF 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1301819 1306237 - CmaCh05G003010.1 Cma05g00301 294419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00301 416 Coils Coil 251 274 - -
Cma05g00301 416 Gene3D - 231 341 - -
Cma05g00301 416 PANTHER TRANSCRIPTION FACTOR E2FC 28 413 - -
Cma05g00301 416 MobiDBLite consensus disorder prediction 115 154 - -
Cma05g00301 416 SUPERFAMILY Winged helix DNA-binding domain 159 222 IPR036390 -
Cma05g00301 416 Pfam E2F/DP family winged-helix DNA-binding domain 161 224 IPR003316 GO:0005667|GO:0006355
Cma05g00301 416 Pfam E2F transcription factor CC-MB domain 240 339 IPR032198 GO:0046983
Cma05g00301 416 SUPERFAMILY E2F-DP heterodimerization region 236 339 IPR037241 -
Cma05g00301 416 PANTHER TRANSCRIPTION FACTOR E2F 28 413 IPR015633 GO:0000978|GO:0006357
Cma05g00301 416 SMART E2F_TDP_2 159 224 IPR003316 GO:0005667|GO:0006355
Cma05g00301 416 Gene3D - 154 226 IPR036388 -
Cma05g00301 416 CDD E2F_DD 235 339 IPR032198 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00301 Cma12g00412 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01309 Cma-Chr2:7700431 Cma05g00301 Cma-Chr5:1301819 3.24E-41 dispersed
Cma05g00301 Cma-Chr5:1301819 Cma20g00153 Cma-Chr20:751925 7.07E-79 dispersed
Cma12g00412 Cma-Chr12:2131679 Cma05g00301 Cma-Chr5:1301819 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35042 PF16421 E2F_CC-MB 3.10E-26 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00301 K06620 - csv:101211469 654.825