Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g00301 | ATGTCGAACGCCGTCGAAGATCTCATCCTTCGCCACCGCCATCGCCACTCTGATTTCCGATTTCATCTCCTTCAATCTCACTCTCAGCATCGCGATATGTCTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTCCAGCTCTTCCGCCTCTTTGTTTACTTCAGTGTCATCGGCCTTTTCCGCCGTCGGATCAGTCCAACGCTTGCAACTTCCGTCATGCTCCCGGCGCACATTCTACAGTTGCTACGCTCGACTTGAAACGAACATATGGTATCAATGACTCTGAGGCCTTGGCTTGTGGACAAGTTGTAGCCTCTGAACAGATGATGCGATCTAATGATTCTTTATGTAAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTTGAGGACTCAAAAATCCGTAGACGAGCCTATTGATGATCCTAATATTTCTACCAACGGTCGGTACGACAGTTCATTAGGATTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTCGAGGGAATAGGGCTTATAGAGAAAACTACGACAAATCATATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTAAACTAAAGGCTGAAGTTAAAAGTTTATATGCAGATGAACATAGACTTGATGAACTTATAAGGATGAAACAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAATCACAGAAAGAACCTTTTTGTAACGGAAGAAGATATCTTGCGAGTTCCTTGTTTCAAGAATCAAACACTCATAGCAGTACAAGCCCCTCAAGCTAGCTGTATTGAGGTGCCTGATCCAGATGAGGAAGCTTGTTTTTCTGAAAGGCAGTGTAGACTGATCATCAAAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGACTGCAAAACAAGGGCTGGAAGAAAATAGTTCCAAGCAAGCGAAACTATCTTCTTCGGTACAGCAGAGGAATCCCAACATACATACCAACAATATTTGTTCTCCTTTCCACGAATTTCATGGAATGCAGAGAATCTTACCTTTATATAATAATATAGACGATGATTATTGGTTCCAATCAAATTCTCAAGTGAGCATTACGCACTTATGGGGTGAGGAACACAACTTTTAA | 1251 | 41.25 | MSNAVEDLILRHRHRHSDFRFHLLQSHSQHRDMSSSSSSSSSSSAPALPPLCLLQCHRPFPPSDQSNACNFRHAPGAHSTVATLDLKRTYGINDSEALACGQVVASEQMMRSNDSLCKPVSSANEKQNKKLKLQKNSKLRTQKSVDEPIDDPNISTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGKLKAEVKSLYADEHRLDELIRMKQELLRNLEENANHRKNLFVTEEDILRVPCFKNQTLIAVQAPQASCIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTAKQGLEENSSKQAKLSSSVQQRNPNIHTNNICSPFHEFHGMQRILPLYNNIDDDYWFQSNSQVSITHLWGEEHNF | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1301819 | 1306237 | - | CmaCh05G003010.1 | Cma05g00301 | 294419 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g00301 | 416 | Coils | Coil | 251 | 274 | - | - | |
Cma05g00301 | 416 | Gene3D | - | 231 | 341 | - | - | |
Cma05g00301 | 416 | PANTHER | TRANSCRIPTION FACTOR E2FC | 28 | 413 | - | - | |
Cma05g00301 | 416 | MobiDBLite | consensus disorder prediction | 115 | 154 | - | - | |
Cma05g00301 | 416 | SUPERFAMILY | Winged helix DNA-binding domain | 159 | 222 | IPR036390 | - | |
Cma05g00301 | 416 | Pfam | E2F/DP family winged-helix DNA-binding domain | 161 | 224 | IPR003316 | GO:0005667|GO:0006355 | |
Cma05g00301 | 416 | Pfam | E2F transcription factor CC-MB domain | 240 | 339 | IPR032198 | GO:0046983 | |
Cma05g00301 | 416 | SUPERFAMILY | E2F-DP heterodimerization region | 236 | 339 | IPR037241 | - | |
Cma05g00301 | 416 | PANTHER | TRANSCRIPTION FACTOR E2F | 28 | 413 | IPR015633 | GO:0000978|GO:0006357 | |
Cma05g00301 | 416 | SMART | E2F_TDP_2 | 159 | 224 | IPR003316 | GO:0005667|GO:0006355 | |
Cma05g00301 | 416 | Gene3D | - | 154 | 226 | IPR036388 | - | |
Cma05g00301 | 416 | CDD | E2F_DD | 235 | 339 | IPR032198 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g00301 | Cma12g00412 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01309 | Cma-Chr2:7700431 | Cma05g00301 | Cma-Chr5:1301819 | 3.24E-41 | dispersed | |
Cma05g00301 | Cma-Chr5:1301819 | Cma20g00153 | Cma-Chr20:751925 | 7.07E-79 | dispersed | |
Cma12g00412 | Cma-Chr12:2131679 | Cma05g00301 | Cma-Chr5:1301819 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35042 | PF16421 | E2F_CC-MB | 3.10E-26 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g00301 | K06620 | - | csv:101211469 | 654.825 |