Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00309 ATGAGAGAGATTCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTCATCTGCGATGAGCACGGTATCGACGCCACCGGAAAATACAACGGAGATCCTTCCTCTGATCTTCAACTGGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGTAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTCGTTTTTGGACAGTCCGGTGCCGGAAATAACTGGGCCAAGGGTCATTACACCGAAGGAGCTGAGTTGATCGACTCCGTTCTTGATGTTGTTCGTAAGGAGGCTGAGAACTGTGATTGCTTGCAAGGTTTTCAGGTTTGTCACTCCCTTGGAGGAGGCACTGGTTCTGGCATGGGAACCCTCTTGATATCGAAGATTAGAGAGGAATATCCAGACAGAATGATGCTCACATTCTCGGTTTTCCCTTCTCCCAAGGTCTCAGACACGGTTGTGGAACCATATAATGCCACACTTTCAGTGCATCAGCTGGTAGAGAATGCAGATGAATGCATGGTTCTTGATAATGAAGCTCTTTATGACATTTGCTTCAGGACCTTAAAGCTCAGCACTCCTAGCTTCGGTGACCTGAACCATTTGATCTCTGCAACCATGAGTGGAGTAACATGTTGCTTGAGATTCCCAGGTCAACTGAACTCAGACCTGAGGAAATTGGCAGTGAATTTGATCCCATTTCCTCGTCTTCACTTCTTCATGGTGGGATTTGCCCCTCTGACCTCCCGTGGCTCCCAGCAGTACATCTCCCTGACCGTCCCAGAGCTGACCCAGCAAATGTGGGACGCCAAGAACATGATGTGCGCCGCCGACCCCCGCCATGGCCGGTACCTGACGGCCTCCGCCATGTTCAGAGGAAGAATGAGCACCAAAGAAGTAGACGAACAGATGATCAACGTGCAGAACAAAAACTCATCCTACTTCGTGGAATGGATCCCCAACAACGTAAAATCAAGTGTGTGTGACATCCCTCCAAAGGGCCTGAAAATGGCGTCCACATTCGTGGGAAACTCGACCTCCATTCAAGAGATGTTCAGAAGGGTGAGCGAGCAGTTCACAGCCATGTTCAGACGCAAGGCTTTTCTGCATTGGTACACAGGTGAAGGAATGGATGAAATGGAGTTTACAGAGGCGGAGAGTAATATGAATGACTTGGTAGCTGAGTATCAGCAGTATCAGGACGCCACCGTTGATGATGATGCTGATTTTGAGGATCGTGAAGAAGAATATCCGGAACAGTAA 1347 49.07 MREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVDDDADFEDREEEYPEQ 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1336705 1340028 - CmaCh05G003090.1 Cma05g00309 294427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00309 448 Gene3D Helix hairpin bin 376 432 IPR023123 -
Cma05g00309 448 SMART Tubulin_C_4 248 385 IPR018316 -
Cma05g00309 448 PANTHER TUBULIN 1 443 IPR000217 GO:0005874|GO:0007017
Cma05g00309 448 Gene3D Tubulin/FtsZ, GTPase domain 1 264 IPR036525 -
Cma05g00309 448 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Beta-tubulin signature 43 60 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Beta-tubulin signature 90 101 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Beta-tubulin signature 110 128 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Beta-tubulin signature 154 166 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Beta-tubulin signature 214 226 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Beta-tubulin signature 232 241 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Beta-tubulin signature 247 260 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Beta-tubulin signature 267 283 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Beta-tubulin signature 313 331 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Beta-tubulin signature 331 345 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Beta-tubulin signature 349 372 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Beta-tubulin signature 379 390 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Beta-tubulin signature 414 432 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma05g00309 448 Coils Coil 410 430 - -
Cma05g00309 448 CDD beta_tubulin 2 428 - -
Cma05g00309 448 Gene3D - 265 375 IPR037103 -
Cma05g00309 448 Pfam Tubulin C-terminal domain 263 384 IPR018316 -
Cma05g00309 448 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Tubulin signature 153 174 IPR000217 GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Tubulin signature 178 191 IPR000217 GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Tubulin signature 192 212 IPR000217 GO:0005874|GO:0007017
Cma05g00309 448 PRINTS Tubulin signature 372 400 IPR000217 GO:0005874|GO:0007017
Cma05g00309 448 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Cma05g00309 448 SUPERFAMILY Tubulin C-terminal domain-like 246 431 IPR008280 -
Cma05g00309 448 PANTHER TUBULIN BETA-1 CHAIN-RELATED 1 443 - -
Cma05g00309 448 SMART Tubulin_4 49 246 IPR003008 GO:0005525
Cma05g00309 448 Pfam Tubulin/FtsZ family, GTPase domain 3 213 IPR003008 GO:0005525
Cma05g00309 448 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 245 IPR036525 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00309 K07375 TUBB; tubulin beta - csv:101204817 874.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00377 Cma-Chr3:4331401 Cma05g00309 Cma-Chr5:1336705 0 dispersed
Cma05g00309 Cma-Chr5:1336705 Cma18g00516 Cma-Chr18:3130175 0 dispersed
Cma20g00010 Cma-Chr20:28556 Cma05g00309 Cma-Chr5:1336705 7.06E-127 dispersed
Cma12g00406 Cma-Chr12:2106827 Cma05g00309 Cma-Chr5:1336705 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1118 Blo01g01599 . . . . . . Bma01g02369 Cmo05g00312 Cmo12g00357 . . . Car12g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda08g01218 . . . Bma01g00727 . . . . . Cma05g00309 Car05g00257 . Cpe11g00258 . . . . . . . . . . . . . . . . Csa02g02138 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00309 Cma_Chr05 FPKM 46.848087 53.849255 47.933372 49.896851 57.299526 61.142254 51.259834 1.360209 0.759865 0.64605