Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00313 ATGGGATTTCTTCGAACCCATTTTCTCTCTCCTCCATTTTTGTTTCTCTCTCTGCTTTTGATCGTCTTCTTTAAAGGCGTCTATGGAGGTGGAATTACATTAATAAATAGATGCGATTACACAATTTGGCCGGGAATTCTCGGAAACACCCAATTGGAATCCACTGGCTTCGAGCTCTCCCCTGGGGCGACGCGTGCATTCCAACCGCCGCCGGGTTGGTCCGGCAGATTCTGGGGTCGGACAGGCTGTTCGTTCGACTCCGCCACCGGTCAAGGCAGCTGCCAGACAGCCGACTGTGGGTCAAACCAAATGGAATGTAATGGCAACGGAGCCACCCCACCCGCGACTCTAGCTGAGTTCACGATTGGTTCCGGTGGTGGCGCGATGGACTTTTACGATGTCAGTTTGGTCGACGGCTACAACATTCCGATGATGGTGGACTCCACTGGCGGGAGCGGCGCTTGTCAGTCGACTGGGTGTGCGGCAGACCTGAACCGACGGTGCCCTGCTGAGCTACGTGGTGGCGAGGGGAAAGCGTGCAGGAGCGCATGTGAGGCGTTTGGGAATCCGGAGTACTGTTGTAGCGGCGCGTATAACTCACCCGCCGCCTGTAAACCGTCGTTGTACTCGGAAATGTTTAAATCGGCTTGTCCCAAATCGTATAGCTACGCCTTTGATGACGCGTCAAGCACTTTTACTTGCAGTGGTGCAGATTACACCATCACATTCTGCCCTTCATCAGCAAGCCAAAAATCAGAAAAAGACCCGTCGAACGGAGGCGATGGTCCGTCGGTGACGTTCAACAGTTCATGGCTGCCGGACTTCATCACCGGAGAAGGATCATCCAAAACAATGGCTTTGTCTTCAGCTTTGAATTGGACACTGCAGAATGTTTCTACATTAACAATTTCTTGA 915 52.57 MGFLRTHFLSPPFLFLSLLLIVFFKGVYGGGITLINRCDYTIWPGILGNTQLESTGFELSPGATRAFQPPPGWSGRFWGRTGCSFDSATGQGSCQTADCGSNQMECNGNGATPPATLAEFTIGSGGGAMDFYDVSLVDGYNIPMMVDSTGGSGACQSTGCAADLNRRCPAELRGGEGKACRSACEAFGNPEYCCSGAYNSPAACKPSLYSEMFKSACPKSYSYAFDDASSTFTCSGADYTITFCPSSASQKSEKDPSNGGDGPSVTFNSSWLPDFITGEGSSKTMALSSALNWTLQNVSTLTIS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1359232 1361013 + CmaCh05G003130.1 Cma05g00313 294431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00313 304 PANTHER OS03G0233200 PROTEIN 20 262 IPR001938 -
Cma05g00313 304 SUPERFAMILY Osmotin, thaumatin-like protein 32 246 IPR037176 -
Cma05g00313 304 ProSiteProfiles Thaumatin family profile. 32 245 IPR001938 -
Cma05g00313 304 Pfam Thaumatin family 36 245 IPR001938 -
Cma05g00313 304 Gene3D Thaumatin 31 245 IPR037176 -
Cma05g00313 304 SMART tha2 32 245 IPR001938 -
Cma05g00313 304 CDD TLP-PA 32 244 - -
Cma05g00313 304 PRINTS Pathogenesis-related protein signature 31 43 IPR001938 -
Cma05g00313 304 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Cma05g00313 304 PRINTS Pathogenesis-related protein signature 55 64 IPR001938 -
Cma05g00313 304 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
Cma05g00313 304 PRINTS Pathogenesis-related protein signature 130 146 IPR001938 -
Cma05g00313 304 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 20 262 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00313 - - - csv:101204331 530.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00313 Cma09g00098 CCT
Cma05g00313 Cma09g00098 ECH
Cma05g00313 Cma12g00403 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00313 Cma-Chr5:1359232 Cma12g00403 Cma-Chr12:2089523 9.46E-159 dispersed
Cma05g00312 Cma-Chr5:1353680 Cma05g00313 Cma-Chr5:1359232 2.16E-95 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1131 . Blo12g00882 . . . Bpe04g00250 . Bma01g02374 Cmo05g00315 . . Cma09g00098 . . . Cpe06g00061 . Bhi04g00140 Tan02g2082 . . Hepe10g0674 . Lcy13g1906 Cla08g01416 . Cec08g1472 Cco08g1605 Clacu08g1587 . Cre08g1370 . . Cone17ag1411 . Lsi04g01754 Csa03g04288 Chy04g00408 Cme03g01872 . . . . Bpe02g01730 Bpe05g00142 . Bma05g00168 Sed01g2481 . Cmo09g00095 Cma12g00403 Cma05g00313 Car05g00260 . Cpe11g00261 . Bhi09g02077 Tan01g5034 Cmetu04g3133 . Hepe01g1607 Mch11g0107 . Cla05g01863 Cam05g1992 Cec05g2004 Cco05g2062 Clacu05g1984 Cmu05g1865 Cre05g1989 Lsi08g01311 Csa02g02142 Chy03g01376 Cme04g00460
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00313 Cma_Chr05 FPKM 5.988172 5.036161 0.741221 0.71664 1.254783 1.052343 1.073539 0.305347 0.0 0.341993