Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00316 ATGGGTTTGCTTAGTAGTATACTGGGTTTCTTCGGATTTGGCTTGGGAACTTCGATTGGGATTGCGATTGGATATTACATGTTCATCTATTTTCAGCCGTCGGATGTCAAGGATCCTGTTATTCGCCCTTTGGTTGAGCAAGATACGAGCTCGTTGTTGCGGATGATGCCGGAAATACCTCTGTGGGTGAAAAATCCTGATTACGATCGTATTGATTGGCTCAACAAATTCCTTGAACTTATGTGGCCTTACTTGGACAAGGCCATTTGTAAGACAGTGAAGAACATAGCAAAGCCTATTATTGCAGAGCAAATTCCAAAATACAAAATCGAGGCTGTTGAATTCGACACGCTTACATTGGGCTGCTTACCACCCACTCTTCAAGGAATGAAAGTTTATACGACCGATGATAAAGAGTTGATCATGGAGCCATGCATGAAGTGGGCGGGAAATCCGAATGTTACCGTTTCAGTTAAAGCATTCGGATTGAAAGCGACTGTTCAGGTGGTCGATTTGCAAGTGTTCGCTATTCCGCGTATAACCCTGAAGCCTTTGGTCCCGACGTTTCCTTGCTTCGCCAAAATATTTGTCTCTCTCATGGAGAAGCCCCATGTCGATTTTGGACTGAAATTGCTCGGTGCAGATGCGATGGCCATCCCGGGGCTGTATAGGTTTGTTCAGGAACTCATAAAAGATCAAGTTGCCAATATGTATCTATGGCCGAAGACCCTCGAAGTACCGATAATGGATCCTGCGAAAGCCATGAAGAAACCTGTTGGCATCCTTCATGTGAAGGTTTTGAAAGCAATGAAGCTGAAAAAGAAGGATCTATTTGGGGCTTCAGATCCATATCTAAAACTGAAGCTCACTGAAGACAAGCTTCCGTCTAAGAAAACGACTGTGAAACACACGAATTTGAACCCGGTTTGGAACGAGGAGTTTACTTTTGTCGTGAAAGATCCCGAGTCTCAAGCTTTGGAACTGATTCTTTACGATTGGGAGCAGGTTGGGAAGCATGATAAGATGGGAATGAATGTTGTTCCACTGAAAGAACTTACACCTGAGGAGTCCAAGGAATTGACTCTTGAAGTGTTGAAAAATATGGATCCTAACGATACACAAAATGAGAAGTCGAGAGGGCAGCTTGTCGTGGAATTGTTGTACAAACCTTTCAAGGACGACGAAGCTCCGAAAGATGATGGTGATGGTGCAGCGGCAGTACAAAAGGCTCCCGATGGAACGCCCGATGGCGGAGGCCTGCTTGCTGTCATAATCCATCAAGCTGAAGATGTGGAAGGGAAGCATCATACGAACCCCTACGTTCGTTTACTTTTCAGAGGAGAGGAGAAACGAACTAAGCATGTTAAGAAGAATCGGGATCCAAGATGGGATGAGGAGTTCCAGTTTATGCTCGAGGAGCCACCGGTGAACGATCGGATTCATGTGGAAGTACTGAGTGCGTCTTCAAGGATAGGCCTGCTTCACCCCAAGGAAACTTTGGGGTATGTGGACATAAACTTGGCTGATGTTGTCTCAAACAAGAGGATTAATGCGAAATATCATCTGATCGACTCGAAGAACGGGCGGATCCAGATCGAGCTACAATGGAGAACTTCATCATAG 1623 45.16 MGLLSSILGFFGFGLGTSIGIAIGYYMFIYFQPSDVKDPVIRPLVEQDTSSLLRMMPEIPLWVKNPDYDRIDWLNKFLELMWPYLDKAICKTVKNIAKPIIAEQIPKYKIEAVEFDTLTLGCLPPTLQGMKVYTTDDKELIMEPCMKWAGNPNVTVSVKAFGLKATVQVVDLQVFAIPRITLKPLVPTFPCFAKIFVSLMEKPHVDFGLKLLGADAMAIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMKKPVGILHVKVLKAMKLKKKDLFGASDPYLKLKLTEDKLPSKKTTVKHTNLNPVWNEEFTFVVKDPESQALELILYDWEQVGKHDKMGMNVVPLKELTPEESKELTLEVLKNMDPNDTQNEKSRGQLVVELLYKPFKDDEAPKDDGDGAAAVQKAPDGTPDGGGLLAVIIHQAEDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWDEEFQFMLEEPPVNDRIHVEVLSASSRIGLLHPKETLGYVDINLADVVSNKRINAKYHLIDSKNGRIQIELQWRTSS 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1367244 1371409 - CmaCh05G003160.1 Cma05g00316 294434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00316 540 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Cma05g00316 540 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 538 - -
Cma05g00316 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 419 537 IPR035892 -
Cma05g00316 540 MobiDBLite consensus disorder prediction 393 413 - -
Cma05g00316 540 CDD C2 262 359 - -
Cma05g00316 540 Gene3D C2 domain 420 539 IPR035892 -
Cma05g00316 540 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 538 IPR045050 GO:0008289
Cma05g00316 540 Gene3D C2 domain 255 411 IPR035892 -
Cma05g00316 540 PRINTS C2 domain signature 277 289 IPR000008 -
Cma05g00316 540 PRINTS C2 domain signature 304 317 IPR000008 -
Cma05g00316 540 PRINTS C2 domain signature 326 334 IPR000008 -
Cma05g00316 540 ProSiteProfiles C2 domain profile. 399 520 IPR000008 -
Cma05g00316 540 Pfam C2 domain 260 360 IPR000008 -
Cma05g00316 540 Pfam C2 domain 420 522 IPR000008 -
Cma05g00316 540 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Cma05g00316 540 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Cma05g00316 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 392 IPR035892 -
Cma05g00316 540 SMART C2_3c 261 361 IPR000008 -
Cma05g00316 540 SMART C2_3c 420 519 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00316 - - - cmax:111491745 1048.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01374 Cma-Chr4:7044060 Cma05g00316 Cma-Chr5:1367244 6.24E-37 dispersed
Cma05g00316 Cma-Chr5:1367244 Cma19g00735 Cma-Chr19:7366044 0 dispersed
Cma13g00063 Cma-Chr13:523669 Cma05g00316 Cma-Chr5:1367244 6.17E-06 dispersed
Cma12g00400 Cma-Chr12:2064885 Cma05g00316 Cma-Chr5:1367244 0 wgd
Cma20g00755 Cma-Chr20:3550894 Cma05g00316 Cma-Chr5:1367244 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1140 . . . . . . . . Cmo05g00317 . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0067 . . . . . . . . . Bpe05g00147 . Bma05g00171 . . . . Cma05g00316 Car05g00262 . Cpe11g00263 . . . . . . . . . . . . . . . . Csa02g02145 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00316 Cma_Chr05 FPKM 54.112156 53.881916 57.910797 56.902218 84.981178 73.755791 80.660019 18.363579 17.98842 18.528219