Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00320 ATGATGCCGTTACCGCCACCACTTATCGGCGGGCGGGTCCTCTGCCAATCGGCAGTGCACCGAGCGTGCACTGGATCGAATATTCGGTGTTTCTCGCAAGGATCGAATCCATTTGGTTTGTATTATCCTTCTTCTGTTCGGAAAGTTGCTGGAAATGTTCGGTGCATCTCTGTGGCCTCTTCATCTTTGGCTCAAGATGTGGTTAATGACTCATCGCGTCCCTCGTTCGTACCCAAGGATGTGGTTCTCTATCAGTACGAGGCTTGCCCGTTCTGCAACAAAGTTGAAGCCTTCTTGGACTATTACAACGTTCCTTATAAAGTTGTGGAGGTGAATCCTGTCTTCAAGAAGGAGATTAAGTGGTCCGAGTACAAGAAGGTGCCAATTCTGATGGTTGATGATATAATTGATAAGCTATACCAAAGAATTCATCCTGAGAACTCTGCCTCGATCTCAGAAGAAGAGAGGAAGTGGCTTGGGTGGGTGGATAATCACCTGGTGCATGTTTTATCGCCAAACATATACAGAAATTACAAAGAGGCTCTTGAGTCTTTCAATTACATAACCTCACATGAAAATTTTACTTTCGCTCAAAGGAGAATAGCAAAGTATGGCGGGCTACAGCCATACCGTCGGTTTCTCGGTGGATCAAATCCTAATTTAGCTGATCTTGCTGTCTTTGGTGTCTTGAGACCGATCCGATACCTTCAATCTGGAAAAGATATGGTAGAACATACAGGAGTTGGTGAATGGTATTATACTAGAATGGAGAAAGCTGTGGGAGAGTCTGCAAGGATTGATTCCGGAAATGATTGA 816 44.73 MMPLPPPLIGGRVLCQSAVHRACTGSNIRCFSQGSNPFGLYYPSSVRKVAGNVRCISVASSSLAQDVVNDSSRPSFVPKDVVLYQYEACPFCNKVEAFLDYYNVPYKVVEVNPVFKKEIKWSEYKKVPILMVDDIIDKLYQRIHPENSASISEEERKWLGWVDNHLVHVLSPNIYRNYKEALESFNYITSHENFTFAQRRIAKYGGLQPYRRFLGGSNPNLADLAVFGVLRPIRYLQSGKDMVEHTGVGEWYYTRMEKAVGESARIDSGND 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1387024 1390194 + CmaCh05G003200.1 Cma05g00320 294438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00320 271 Pfam Glutaredoxin 81 134 IPR002109 -
Cma05g00320 271 PANTHER GLUTATHIONE S-TRANSFERASE FAMILY PROTEIN 211 267 - -
Cma05g00320 271 SUPERFAMILY Thioredoxin-like 80 166 IPR036249 -
Cma05g00320 271 PANTHER GLUTATHIONE S-TRANSFERASE FAMILY PROTEIN 31 206 - -
Cma05g00320 271 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 211 267 - -
Cma05g00320 271 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 31 206 - -
Cma05g00320 271 SFLD Prostaglandin E synthase like.1 44 206 IPR034334 GO:0050220
Cma05g00320 271 Gene3D Glutaredoxin 75 151 - -
Cma05g00320 271 ProSitePatterns Glutaredoxin active site. 83 99 IPR011767 -
Cma05g00320 271 ProSiteProfiles Glutaredoxin domain profile. 69 177 - -
Cma05g00320 271 Gene3D - 152 208 - -
Cma05g00320 271 Gene3D - 209 266 - -
Cma05g00320 271 SFLD Prostaglandin E synthase like 44 206 - -
Cma05g00320 271 SUPERFAMILY GST C-terminal domain-like 148 260 IPR036282 -
Cma05g00320 271 CDD GST_C_mPGES2 152 262 IPR034335 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00320 K05309 PTGES2; microsomal prostaglandin-E synthase 2 [EC:5.3.99.3] - csv:101215364 417.927
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00320 Cma12g00397 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00320 Cma-Chr5:1387024 Cma10g00331 Cma-Chr10:1525204 1.50E-91 dispersed
Cma12g00397 Cma-Chr12:2050309 Cma05g00320 Cma-Chr5:1387024 6.05E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1151 . . . . . . . . Cmo05g00323 Cmo12g00348 . . . Car12g00375 Sed08g0406 . Cpe07g00352 Bhi04g00121 Tan02g2832 Cmetu03g2049 . Hepe10g0170 . Lcy13g1896 Cla08g01407 Cam08g1887 Cec08g1464 Cco08g1597 Clacu08g1579 . Cre08g1362 . . . . . . . . . . Bda08g01209 . . Bpe05g00149 . Bma05g00181 . . . Cma12g00397 Cma05g00320 Car05g00267 . Cpe11g00268 . . . . . . . . . . . . . . . Lsi08g01303 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001449 3 2 2 3 3 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 4 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00320 Cma_Chr05 FPKM 1.561674 2.832772 2.55618 2.803066 0.804113 1.593581 1.597924 6.188139 5.287674 6.780228