Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00323 ATGGCGAAACTTCCTTTGATCTTCGCTTTCTCTCTTGCTCTCTCCAACTTCTTCATCTTTTCCGGCAATGCTTTTGCGCCGTCGGGATGGAACCCCGCCCACGCCACCTTCTACGGCGACAGCGATGCCTCAGGGACAATGGGCGGAGCTTGTGGGTATGGGAACTTGTACCAGACGGGTTACGGGACGAGAACGGCGGCGCTGAGTACGGCGCTGTTCAATGACGGTGCATCGTGCGGTCAATGCTTCAAGATCATTTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACCGTGACGGCGACCAATTTCTGCCCCCCTAACTATGCTCTGCCGAACAACAATGGCGGCTGGTGTAATCCTCCGCTTAAGCACTTCGACATGGCTCAGCCTGCTTGGCAGAAGATCGGCATTTACAGAGGCGGAATCATCCCCGTCCTCTTCCAAAGAGTTCCATGCATGAAGAAAGGAGGCGTGAGATTTACTGTGAATGGAAGAGACTATTTTGAGCTAGTCTTGATAAGCAACGTGGGAGGGGCTGGATCCATCCAATCGGTATCCATTAAAGGCTCAAAATCCGGCAATTGGACGCCAATGTCGAGGAATTGGGGCGCCAATTGGCAGTCCAATTCCTATCTAAATGGCCAATCTTTGTCCTTCAAGATCACCACTAGCGATGGCCAGACCCGAGTGTTCAATAATGTTGTGCCTTCAAGCTGGCGGTTCGGCCAGACATTTGGAAGCAAGGTCCAATTCAGCTGA 777 52.38 MAKLPLIFAFSLALSNFFIFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLFQRVPCMKKGGVRFTVNGRDYFELVLISNVGGAGSIQSVSIKGSKSGNWTPMSRNWGANWQSNSYLNGQSLSFKITTSDGQTRVFNNVVPSSWRFGQTFGSKVQFS 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1398559 1400784 + CmaCh05G003230.1 Cma05g00323 294441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00323 258 SUPERFAMILY Barwin-like endoglucanases 29 181 IPR036908 -
Cma05g00323 258 Gene3D - 163 258 IPR036749 -
Cma05g00323 258 Pfam Lytic transglycolase 65 152 IPR009009 -
Cma05g00323 258 SMART dpbb_1 65 153 IPR007112 -
Cma05g00323 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Cma05g00323 258 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Cma05g00323 258 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Cma05g00323 258 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Cma05g00323 258 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Cma05g00323 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Cma05g00323 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Cma05g00323 258 PANTHER EXPANSIN 14 257 - -
Cma05g00323 258 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Cma05g00323 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Cma05g00323 258 PANTHER EXPANSIN-A15 14 257 IPR002963 GO:0009664
Cma05g00323 258 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Cma05g00323 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Cma05g00323 258 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Cma05g00323 258 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Cma05g00323 258 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Cma05g00323 258 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Cma05g00323 258 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Cma05g00323 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Cma05g00323 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Cma05g00323 258 Gene3D - 20 159 IPR036908 -
Cma05g00323 258 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00323 Cma-Chr5:1398559 Cma04g01668 Cma-Chr4:8389926 7.97E-119 dispersed
Cma12g00395 Cma-Chr12:2036429 Cma05g00323 Cma-Chr5:1398559 9.48E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00323 - - csv:101216569 505.368