Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00324 ATGCCTCCTCCTTCACTGAATTTGATGTTTTTTCTGTCTCTACTGCTCCTTTTGCATCTCCGACCTACAATTGCTGCTATAACGATCCCTCTCGGGTACTCGGTTCCCGCCGTCTTCGTCTTCGGAGACTCGATCGTCGATACGGGTAACAACAACAATGTCATTACTCAAGCTAAGTGTAACTACCCGCCCTATGGTAGGGATTTCCCCGGTGGAAGCCCGACCGGCCGATTCTCCAATGGCAGGGTTCCCTCCGACCTAGTTGCTGATGCTCTGGGTATCAAAAAACTCTTGCCACCGTACGCCGATCCAAATCTTCAACCTGAAGACCTAATTACCGGCGTCAACTTTGCTTCTGGTGGAGCTGGATTCGACCCTCTAACCTCTCAAACAGCGCCAGCAATATCACTTGAGGATCAATTAGCAAATTTCAGAGCATACAAGAAGAAGCTAGAAGGGCTTGTAGGAGAAGAAAGAGCAAAGTTCATAATAGTCAATAGCCTTTACCTTGTGGTGGCTGGCAGCAATGACATAGCCAACACCTTTTATCTTGCAAGAATAAGACAACTTCACTTCACCATTGATTCCTATACTGATTTCATGGCTCAATCCGCTTCTGCTTTCGTCAAGGAACTGTACGCAGCCGGTGCACGAAGAATTGGATTCTTCTCAACTCCACCGCTCGGATGCGTACCGTCACAAAGAACTTTGGCGGGCGGGATTCAAAGGGAGTGTGTGAATGAGTATAATAATGCTGCAAAGCTTTTCAATGGGAAGTTGCATTCCACTTTGGATCACCTTCAAACTATACTCCCGGATAGTAGAGTGGTTTATGTGGATATTTACAACCCTTTACTTGATGTTATCCTAAACTACGTTAAATATGGATTCAAAGTTGCAGATAGAGGGTGTTGTGGAAGCGGGTTAATTGAGGTGACGTTTTTGTGCAATAAGTTCGTGAAGACTTGCCCCGATAGCACCAAATGCGAGTTGAGATATCTCGGGCGACCAAATTCACTGAGAAATTGGCGCCCATCTTTCAAATGCAGAGCTTCGACTCGAATTCCATTGTTTGAAGATCGGAAAGGAAACCCTAGACTAGAAATCTGGTCGGTCCAAGCAACTGTTCTTCAGAGTTTCTTTGATGGCTTAGTTCATCGCCGCGAGAAATCATCTCGCCGCAGTCCGATTGAAATCATGAAGCGGCTACAAAGGGAAGCATTTTCTGATATAATGAGAATCAGGGACCGACAAGACAAGGTAGAGAAGATTTTATCCTTTTACAATACACAGAAGAGTAGTCCATTCCAAGAAAACGCCACCCATGTAAAGGGCGAGGTTCATATGGTGGGTGCATTGCTATTGATGAGTGTTATTGATAATCATAGCGTCAATGCACTTCGTAGAGCAGGGATCTCAACAGGAATTCACTCGAGATTGACTTTTGAAACAACTGTAAGAGAGAGTGATTCTCTTGTCGCAGAGTTTGTAGCGAATCAGAAGGCCGTGGTGGATTCTGGTGTTGATTCTGGACGTGAACTTACTCTATCTAAAGTTCTTTATAAGGCCAGTGTGAGAGATTGGATGTCTGCAATTGTTGTCCCTGTTGGAGCTCGATGTCGAGATGTTGCTGTACTTGCAAATCCTTCTCATCAGGAAAAGGGTCTTACTGATATTTCATCATATGGACCACCCCTTTTGGAGCAGCCTAACGGTGGTGCCATTGGTTTAACAGTCAGAAAATCCAATGTCACAGCTTCCTTGGCTCAATTCATTTCCACAGAGAGAAACCAGCCAAGTTTAGATCGGATTCAACATGACCTTGGCACTTTTGGGCAACTGGTATGTCAACTTCCAAGAGGAACAAAACTCTCACTTCTGGGTCTTCTCGAAGTACCGAAACTATCCAATCTCAACCTTGGAGCTCTTACGATTCCAGTGTGTCTCGGGACTCGACATGAATCTCCCGAAACAGTCGAGGCACCCGACCCCGGGAAAGCTATTTCAAGGAGATCCATTGCTTTACATCTGGAGTCGGAACTCGATGAAGCAACCAGAATTGGAGGTTGGGTTGAGCTGAATCAATCAAATCCAAAACAAATAAAATGGGCTGTATCAATGTCTGATAAGAATAACAACAACGAAGATGCATTAGGCTGGGGAATGAGTTTAAGTGGGATTGCTGGCGGTCCACAAGAAAGGGATCAGTTTAAGGCTGAATCTTATGTGACACTGAATATGAACAAGCGATTCAAGTTAAAGCCAGGGATTGCATATGTGACAGACGGCAATGCCAAGGCGATGGCTTTCCTTGTTCGATGTTCTTCATACAAAATATATGATTACTCTCTTCGTTTCGCAACGCAGCGCCTCGGTCTGGGTTTGAGACCTCATCGAATCTTCCAGAAAGCGAAATACGGCACCATGTCTTCAGGCAGGAAGATCACGTTGAAGAGTTCCGATGGCGAGATCTTTGAGGTCGACGAAGCTGTGGCCTTGGAGTCACAGACGATCAAGCACATGATTGAAGACGATTGCGCCGATAGCGGAATCCCTCTCCCTAACGTCAACAGCAAGATCTTGTCTAAGGTTATCGAGTACTGCAAGAAGCATGTCGAGTCCCCCAAGCCGGAGGATCGTACTGGCTCCGTCGACGATGACCTCAAGACTTGGGACAGCGAATTCGTCAAAGTCGACCAAGCCACCTTGTTCGATCTCATTCTGGCTGCAAACTATCTCAACATCAAAAGCTTGCTAGATTTGACATGTCAGACGGTGGCTGACATGATCAAGGGGAAGACTCCTGAGGAGATCCGCAAGACATTTAACATCAAGAACGACTTTACGCCCGAGGAAGAGGAGGAGGTTCGTAGGGAGAACCAGTGGGCCTTTGAATAG 2898 45.96 MPPPSLNLMFFLSLLLLLHLRPTIAAITIPLGYSVPAVFVFGDSIVDTGNNNNVITQAKCNYPPYGRDFPGGSPTGRFSNGRVPSDLVADALGIKKLLPPYADPNLQPEDLITGVNFASGGAGFDPLTSQTAPAISLEDQLANFRAYKKKLEGLVGEERAKFIIVNSLYLVVAGSNDIANTFYLARIRQLHFTIDSYTDFMAQSASAFVKELYAAGARRIGFFSTPPLGCVPSQRTLAGGIQRECVNEYNNAAKLFNGKLHSTLDHLQTILPDSRVVYVDIYNPLLDVILNYVKYGFKVADRGCCGSGLIEVTFLCNKFVKTCPDSTKCELRYLGRPNSLRNWRPSFKCRASTRIPLFEDRKGNPRLEIWSVQATVLQSFFDGLVHRREKSSRRSPIEIMKRLQREAFSDIMRIRDRQDKVEKILSFYNTQKSSPFQENATHVKGEVHMVGALLLMSVIDNHSVNALRRAGISTGIHSRLTFETTVRESDSLVAEFVANQKAVVDSGVDSGRELTLSKVLYKASVRDWMSAIVVPVGARCRDVAVLANPSHQEKGLTDISSYGPPLLEQPNGGAIGLTVRKSNVTASLAQFISTERNQPSLDRIQHDLGTFGQLVCQLPRGTKLSLLGLLEVPKLSNLNLGALTIPVCLGTRHESPETVEAPDPGKAISRRSIALHLESELDEATRIGGWVELNQSNPKQIKWAVSMSDKNNNNEDALGWGMSLSGIAGGPQERDQFKAESYVTLNMNKRFKLKPGIAYVTDGNAKAMAFLVRCSSYKIYDYSLRFATQRLGLGLRPHRIFQKAKYGTMSSGRKITLKSSDGEIFEVDEAVALESQTIKHMIEDDCADSGIPLPNVNSKILSKVIEYCKKHVESPKPEDRTGSVDDDLKTWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1401541 1410609 - CmaCh05G003240.1 Cma05g00324 294442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00324 965 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 24 328 - -
Cma05g00324 965 PANTHER GDSL ESTERASE/LIPASE EXL3 24 328 - -
Cma05g00324 965 SMART skp1_3 812 915 IPR001232 GO:0006511
Cma05g00324 965 SUPERFAMILY Skp1 dimerisation domain-like 888 963 IPR036296 GO:0006511
Cma05g00324 965 Gene3D SGNH hydrolase 32 330 IPR036514 -
Cma05g00324 965 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 38 49 IPR008265 GO:0006629|GO:0016298
Cma05g00324 965 SUPERFAMILY POZ domain 813 875 IPR011333 -
Cma05g00324 965 CDD BTB_POZ_SKP1 814 930 - -
Cma05g00324 965 Gene3D Potassium Channel Kv1.1; Chain A 809 965 IPR011333 -
Cma05g00324 965 SUPERFAMILY SGNH hydrolase 37 254 - -
Cma05g00324 965 CDD SGNH_plant_lipase_like 36 328 IPR035669 -
Cma05g00324 965 Pfam Skp1 family, tetramerisation domain 814 872 IPR016073 GO:0006511
Cma05g00324 965 Pfam GDSL-like Lipase/Acylhydrolase 38 308 IPR001087 GO:0016788
Cma05g00324 965 Pfam Skp1 family, dimerisation domain 916 963 IPR016072 GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00324 - - - cmax:111492487 633.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01382 Cma-Chr4:7075046 Cma05g00324 Cma-Chr5:1401541 5.70E-32 dispersed
Cma05g00324 Cma-Chr5:1401541 Cma18g00394 Cma-Chr18:2160185 1.15E-83 dispersed
Cma16g01249 Cma-Chr16:9446850 Cma05g00324 Cma-Chr5:1401541 1.05E-78 dispersed
Cma12g00390 Cma-Chr12:2013924 Cma05g00324 Cma-Chr5:1401541 0 transposed
Cma12g00391 Cma-Chr12:2017823 Cma05g00324 Cma-Chr5:1401541 2.81E-105 transposed
Cma15g01085 Cma-Chr15:6905389 Cma05g00324 Cma-Chr5:1401541 1.54E-16 transposed
Cma12g00389 Cma-Chr12:2010444 Cma05g00324 Cma-Chr5:1401541 6.46E-170 wgd
Cma05g00324 Cma-Chr5:1401541 Cma07g00411 Cma-Chr7:1780912 1.34E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1154 Blo01g01608 . . . . . . . Cmo05g00327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma05g00324 Car05g00271 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005525 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00324 Cma_Chr05 FPKM 81.592232 89.402596 160.951187 151.387192 58.109295 73.825645 59.26804 204.693604 212.521759 192.095535