Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00328 ATGAATGGTCATGATGCGGAGCCGTTGGTGTACGTGCACGGCGATCTCGATTTGAAGATCATTGAGGCGCGGCGTTTGCCTAATATGGATTTGCTAACGGAGCGTATTCGGCGGTTTTTTACTGTTTTTACTTCTTGTCGGAAACCGTTTTCCAAGAACGATGAGGATGAACACAAGCGCCACCGGAAGATTATTACTAGTGATCCTTACGTCACCGTTTGTCTTGCGGGAGCGACGGTTGCTCGGACGCGAGTTATTTCGAACTCGCAGAACCCTATCTGGAACGAGCACTTCAAAATATCTCTTGCTCATCCGGTCTCGCAGGTGGAGTTTCATGTGAAGGATAACGATGTGTTTGGTGCGGATTTGATTGGCATTGCCACGGTCCCTGCGCGCAGAGTTCTTTCTGGCGAAGTCATAGATGATTGGTTTCCGATTATCGGTTCGTTTGGGAAACCGCCGAAGCCGGACTCTGCTGTACGCTTGGAAATGAAATTCACGAAGTGCGAGGACAATCCTCTGTACCGTCAAGGCATTGCAGCCGATCCCGAACATTTTGGCGTTCGGAATTGCTATTTCCCGGTACGCCATGGGGGTTCGGTAACGCTTTATCAGGACGCGCACGTTCCCGATAACATGTTGGAGGAGATTGAATTGGAAAAGGGGAATTTGTATCAGCATGAGAATTGCTGGGAGGATATATGCCATGCCATTTTGGAGGCTCACCATTTAGTCTACATCGCTGGTTGGTCCATATATCATAAGGTGAAGCTTGTGAGAGAGCCTTCAAAGCCGTTGCCTAATGGTGGGGATTTGAACTTGGGAGAGTTGCTCAAGTACAAGTCTCAAGAAGGGGTGCGAGTCTTGTTATTGGTTTGGGATGACAAGACTTCCCACAGCAAGTTCTTCATTAACACGACTGGAGTGATGCAGACGCATGATGAGGAGACCCGGAAGTTCTTCAAGCACTCTTCTGTGTCATGTGTGCTGTCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGTTGTTGGAACGCTTTTCACCCATCACCAGAAGTGCGTGATTGTGGATACTCAAGCATCTGGAAATTACCGGAAGATTAGTTCTTTTATTGGAGGACTTGACCTTTGCGATGGTCGTTACGATACTCCCGAGCATCGGTTGTTAAAAGATCTTGACACTGTATTTGATGATGATTATCATAATCCAACTTTTTCCGGAGGTGCAAAGGGTCCTCGGCAGCCATGGCATGATTTACATTGCAAAATTGAAGGGCCTGCGGCATATGACGTGCTTACTAACTTTGAACAACGATGGCGAAAAGCCACAAAATGGTCTGAATTAGGTCAGCGGTTCAAAAGAGTATCACATTGGCATGAAGATGCTTTAATAAAGTTGGAACGTATATCTTGGATACTCAGTCCATCTCAGTCAGTCCCTAACGACGATCCATTGTTATGGGTTTCTGAGGAAAATGATCCCAACAATTGGCATGTTCAGGTCTTCCGGTCCATAGATTCAGGATCTTTGAGAGGATTTCCCAAGGATGTTTTTCAAGCCGAGTTGCAGAATCTGGTTTGTGCAAAAAATTTGGTTATTGACAAAAGCATTCAAACAGCATATATTCAAGCTATAAGATCTGCCCAACACTTCATATACATTGAGAATCAGTATTTTCTAGGATCGTCGTTTGCGTGGCCTGCGTACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAGTTGGCATTGAAGATTGCTAGTAAGATAAGAGCCAATGAGAGGTTTGCTGTATACATTGTGATACCAATGTGGCCTGAAGGGGCTCCCAGTTCTGTTTCTGTTCAAGAAATATTGTTCTGGCAGGGCCAGACAATCCAAATGATGTATGAAATCGTTGGACGAGAGTTGAAATATAAGAATCTCGAGAACGCTCATCCCTCAGACTACTTGAACTTTTACTGTCTTGGCAATAGGGAACCTCCCAACGACTTATCATGCTCCTCTACTCATTCTCTCAAGAGTGAAGATTTGACTTCAGACTCGCAAAAGTTCCGAAGATTCATGATATACGTGCATGCGAAAGGAATGATTGTCGACGACGAGTATGTAATAATAGGGTCTGCTAACATAAATCAAAGATCAATGGCTGGTTCAAGGGACACTGAGATTGCCATGGGTGCATATCAACTCAATAACACATGGGTTAAGAGGAAACGACATCCACGAGGCCAGGTTTATGGCTATAGAATGTCGCTGTGGGCCGAACATTTAGGAAACATCGACAGTTGCTTCAAGGAGCCAGAAAGTTTGGTTTGTGTGAAAGCAGTGAACAAGATAGCTGAAGATAACTGGAAGAAATACACAGCCGAGGAGTTTAAGCCATTGCAAGGACACCTCCTGAAGTACCCGATTGATGTGAGCCAAAGTGGGAGGGTTGGGCCGTTGAGTGGACACGAGACATTCCCTGACTTCGGTGGTAAGGTCCTTGGGGCTCGATCTAACCTCCCTGATGCTCTTACTACATAA 2541 45.45 MNGHDAEPLVYVHGDLDLKIIEARRLPNMDLLTERIRRFFTVFTSCRKPFSKNDEDEHKRHRKIITSDPYVTVCLAGATVARTRVISNSQNPIWNEHFKISLAHPVSQVEFHVKDNDVFGADLIGIATVPARRVLSGEVIDDWFPIIGSFGKPPKPDSAVRLEMKFTKCEDNPLYRQGIAADPEHFGVRNCYFPVRHGGSVTLYQDAHVPDNMLEEIELEKGNLYQHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGDLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNYRKISSFIGGLDLCDGRYDTPEHRLLKDLDTVFDDDYHNPTFSGGAKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSELGQRFKRVSHWHEDALIKLERISWILSPSQSVPNDDPLLWVSEENDPNNWHVQVFRSIDSGSLRGFPKDVFQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSFAWPAYKEAGADNLIPMELALKIASKIRANERFAVYIVIPMWPEGAPSSVSVQEILFWQGQTIQMMYEIVGRELKYKNLENAHPSDYLNFYCLGNREPPNDLSCSSTHSLKSEDLTSDSQKFRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGSRDTEIAMGAYQLNNTWVKRKRHPRGQVYGYRMSLWAEHLGNIDSCFKEPESLVCVKAVNKIAEDNWKKYTAEEFKPLQGHLLKYPIDVSQSGRVGPLSGHETFPDFGGKVLGARSNLPDALTT 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1422755 1428501 + CmaCh05G003280.1 Cma05g00328 294446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00328 846 SMART pld_4 692 719 IPR001736 GO:0003824
Cma05g00328 846 SMART pld_4 349 384 IPR001736 GO:0003824
Cma05g00328 846 SUPERFAMILY Phospholipase D/nuclease 538 765 - -
Cma05g00328 846 Pfam Phospholipase D Active site motif 693 719 IPR001736 GO:0003824
Cma05g00328 846 Pfam Phospholipase D Active site motif 350 384 IPR001736 GO:0003824
Cma05g00328 846 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 692 719 IPR001736 GO:0003824
Cma05g00328 846 PANTHER PHOSPHOLIPASE D 8 845 IPR015679 -
Cma05g00328 846 PIRSF PLD_plant 1 846 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cma05g00328 846 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 349 384 IPR001736 GO:0003824
Cma05g00328 846 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 168 IPR035892 -
Cma05g00328 846 Pfam C2 domain 14 146 IPR000008 -
Cma05g00328 846 CDD C2_plant_PLD 10 167 - -
Cma05g00328 846 PANTHER PHOSPHOLIPASE D 8 845 - -
Cma05g00328 846 SUPERFAMILY Phospholipase D/nuclease 213 455 - -
Cma05g00328 846 Pfam Phospholipase D C terminal 766 836 IPR024632 -
Cma05g00328 846 Gene3D Endonuclease Chain A 214 467 - -
Cma05g00328 846 SMART C2_3c 15 143 IPR000008 -
Cma05g00328 846 Gene3D Endonuclease Chain A 521 737 - -
Cma05g00328 846 Gene3D C2 domain 12 175 IPR035892 -
Cma05g00328 846 ProSiteProfiles C2 domain profile. 1 144 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00651 Cma-Chr3:5505034 Cma05g00328 Cma-Chr5:1422755 0 dispersed
Cma05g00328 Cma-Chr5:1422755 Cma08g00939 Cma-Chr8:5850444 0 dispersed
Cma05g00328 Cma-Chr5:1422755 Cma07g00400 Cma-Chr7:1719675 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00328 K01115 - csv:101213442 1654.03