Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00329 ATGGTATTTTTGTGTGGATTTTGCTCGTTGTTTCTGCTTCCTACAAAAAACTCCACCCGCCTTCGCCAGGAATGTTCAATTCTGTACAATTTCTTCAACCAATCAAGAACACAGTACCCACTTCTTCTTCGGCCATTTCACCCCATTCGTCATTGCGTAGCTGCAGAAGCGCTTGTTTCAGCGTTAGTGATCGCTGTAAAATCGTGCACTTCCATCTCAAGTTGCCGGGGAATTCATGCCCGAGTAATCAAATCTTTTCTTTATAGAGATGGATTCATTGGGGATCAGCTGGTCACTTGTTATAATAAATTGGGCTATGCTGAAGATGCACAGAAGGTGTTTGATGATATGCCTGATAGAGATTTGGTTTCTTGGAACTCACTGATTTGTGGGTTTTCCCGGTGCCTTCATGTAACTCTCAAAGCCTTTTGTACCATGAAGTTTGAAATGTCAGTTAAACCCAATGAGGTAACAATTCTATCGATGATATCGGCTTGCAACGGAGCTTTGGATGTAGGGAGGTATATTCATGGCTTTGCTATTAAAATTGGTGTTTCTTTGGAAGTTAAGGTCGTTAATTCTTTCATTAACATGTACGGAAAGTCTGGGGATTTAACATCTGCTTGTAGATTATTTGAGGCTATTCCATACCCGAATATAGTATCGTGGAATTCAATCATTGCTGCTCGAGTTACTAATGGCTGTGCAGGAGAAGGAGTTCATTGTTTTAATAAGATGAGAATGTTTGGAATGGAGCCGGATGAAGGAACTATCCTGGCTCTGCTTCAAGCTTGCGTGCACTTGGGTGTAGGAAAGTTGGCTGAAAGCATTCATGGGTTAATCTTCTGCTCTGGTCTAGGTGCACAAATCGCCATAGCCACTGCACTTTTAGATTTGTATGCGAAATTGGGAAGATTAAGTGCTTCATATGATGTCTTTGGGGAGGTGGGTTGTGCAGACAGAGTTGCTTGGACTGCCATGCTTGCAGGATATGCCGCACATGGGTTGGGTAGGGAGGCTATCAAGCTTTTCGAGAACATGGCTGAGAGAGGCTTGGAGCCTGATCATGTCACTTTTACTCATTTGCTTAGCGCATGTAGTCATTCAGGGCTAGTCAGAGAGGGGAAACGTTACTTCAATTTGATGTCTGAGGTATATGGAATTGAGCCCAGGATAGATCATTATTCATGTATGGTTGATCTACTCGGTCGCTGTGGTCTTTTGAATGATGCTTATGAGGTGATACGAAGCATGCCTATGGAGCCCAATGCTGGCGTGTGGGGTGCCCTTCTTGGTGCTTGTAGGGTCTATGGTAACATAGAACTTGGTAAGGAAGTTGCAGAGCATTTGATTCATCTGGAGCCTCTGGACCCCAGAAATTACATCATGTTATCAAATATGTATGCAGCAGCTTGTTCTTGGAAGGATGCTGCCAAAGTGAGGGCCTTGCTAAAGGAGAGAGGCCTGAAAAGAACCCCTGGATGGAGCTCCATTGAATATGGAAACAAGATCCACCAGTTCTTCGTGGGCGATCGATCTCACCCCGAGACGGAGAAGATCTATTCCAAGCTTGAAGAATTGCTTGGAAAGATAAGGAAAACTGGATATAGTTCCAAAACAGAATATGTTCTGCAAGACGTTGAAGAGGAAATCAAGGAGGATATGATAAACAAGCACAGCGAGAAGTTAGCCATTGCTTTTGGGCTTTTGGTGAGTAAAGAAGGAGACCCTTTAATCATTACAAAGAATCTTAGAATTTGTGGAGATTGTCATAGCACTGCAAAGCTCATATCATTGATTGAGAAGCGTACCATTATCATCCGAGATCCAAAACGCTTTCACCATTTCTCTAATGGATTCTGTTCTTGTTCAGATTACTGGTAA 1884 42.99 MVFLCGFCSLFLLPTKNSTRLRQECSILYNFFNQSRTQYPLLLRPFHPIRHCVAAEALVSALVIAVKSCTSISSCRGIHARVIKSFLYRDGFIGDQLVTCYNKLGYAEDAQKVFDDMPDRDLVSWNSLICGFSRCLHVTLKAFCTMKFEMSVKPNEVTILSMISACNGALDVGRYIHGFAIKIGVSLEVKVVNSFINMYGKSGDLTSACRLFEAIPYPNIVSWNSIIAARVTNGCAGEGVHCFNKMRMFGMEPDEGTILALLQACVHLGVGKLAESIHGLIFCSGLGAQIAIATALLDLYAKLGRLSASYDVFGEVGCADRVAWTAMLAGYAAHGLGREAIKLFENMAERGLEPDHVTFTHLLSACSHSGLVREGKRYFNLMSEVYGIEPRIDHYSCMVDLLGRCGLLNDAYEVIRSMPMEPNAGVWGALLGACRVYGNIELGKEVAEHLIHLEPLDPRNYIMLSNMYAAACSWKDAAKVRALLKERGLKRTPGWSSIEYGNKIHQFFVGDRSHPETEKIYSKLEELLGKIRKTGYSSKTEYVLQDVEEEIKEDMINKHSEKLAIAFGLLVSKEGDPLIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSNGFCSCSDYW 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1431501 1433384 + CmaCh05G003290.1 Cma05g00329 294447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00329 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Cma05g00329 627 Gene3D Tetratricopeptide repeat domain 275 506 IPR011990 GO:0005515
Cma05g00329 627 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 39 613 - -
Cma05g00329 627 TIGRFAM PPR: pentatricopeptide repeat domain 221 255 IPR002885 -
Cma05g00329 627 TIGRFAM PPR: pentatricopeptide repeat domain 357 390 IPR002885 -
Cma05g00329 627 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Cma05g00329 627 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Cma05g00329 627 Pfam E+ motif 504 531 IPR046849 -
Cma05g00329 627 Pfam PPR repeat 221 250 IPR002885 -
Cma05g00329 627 Pfam PPR repeat 193 213 IPR002885 -
Cma05g00329 627 Pfam PPR repeat 394 419 IPR002885 -
Cma05g00329 627 Pfam PPR repeat 97 121 IPR002885 -
Cma05g00329 627 Gene3D Tetratricopeptide repeat domain 54 170 IPR011990 GO:0005515
Cma05g00329 627 Gene3D Tetratricopeptide repeat domain 171 274 IPR011990 GO:0005515
Cma05g00329 627 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 39 613 - -
Cma05g00329 627 Pfam E motif 437 499 IPR046848 -
Cma05g00329 627 Pfam DYW family of nucleic acid deaminases 535 627 IPR032867 GO:0008270
Cma05g00329 627 Pfam PPR repeat family 320 367 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00329 - - - cmos:111462403 1241.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00329 Cma-Chr5:1431501 Cma16g00252 Cma-Chr16:1172783 1.26E-36 dispersed
Cma03g00459 Cma-Chr3:4699968 Cma05g00329 Cma-Chr5:1431501 1.37E-91 transposed
Cma05g00329 Cma-Chr5:1431501 Cma09g00376 Cma-Chr9:1571319 9.13E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g147 . . . . . . . . Cmo05g00332 . . . . . . . . Bhi04g00085 . . . . . . Cla08g01392 . . . . . . . . . Cone20ag0051 . . . Cme03g01544 . . Bda08g01186 . Bpe02g01681 Bpe05g00164 . . . . . . Cma05g00329 Car05g00276 . . . . . . . . . . . . . . . . . Lsi08g01284 . Chy03g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012454 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 2 0 0 1 1 0 0 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00329 Cma_Chr05 FPKM 0.36518 0.796559 1.359992 1.357407 5.132168 5.3839 5.234155 1.618347 1.556387 0.983789