Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00330 ATGAACTACTCGGTTTCTTCTTCTCTCTCCGACCAACTTCACCTCCTTGGAAAAGCCGAGGTTTTTAAACTCCATGGTCGTGATAGAGCTGGCCGCAATGTCTTCCTCATTGTTGGAAAACACTTTCCAGCTCGGTTCGTGAGCACCCAGGCTGTGAATCTCTATCTGAAGGATAAGATTTTCCCCTTCGTCAAAGATGGGCCCTTCACGTTGGTGTACATTCACACAGATGTTCACTGGACAGAGAATTTCCCTGGAATCTCCAATCTCAAGGCAATCTATGAGTTCATTCCAACAAACATTAAGAACAACCTTAAAGCTGTTTATTTTGTCCACCCCGGTTTGCAGGCTCGTCTGTTCTTCGCCACTGTCGGCCGCCTAATTCTGGGCGCCGAGCTGTATAACAAAGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAGTATGTTAGAAGGAAAGAGATAGAGTTACCGGAGTTTGTGTATGATCATGATGAGAAATTGGAGTTCTGTCCTGTGATGGACTCTGGCTTGGAAAGTGATTATCTCAGGCTCTTCTCCGCCTCGCCGTCTGTGGATTCTGCGGTTTCTACGTACTCCTCCATGAGGTGTTTTGCTTGA 621 46.05 MNYSVSSSLSDQLHLLGKAEVFKLHGRDRAGRNVFLIVGKHFPARFVSTQAVNLYLKDKIFPFVKDGPFTLVYIHTDVHWTENFPGISNLKAIYEFIPTNIKNNLKAVYFVHPGLQARLFFATVGRLILGAELYNKVKYVKRVEFLWEYVRRKEIELPEFVYDHDEKLEFCPVMDSGLESDYLRLFSASPSVDSAVSTYSSMRCFA 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1434551 1435868 + CmaCh05G003300.1 Cma05g00330 294448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00330 206 SUPERFAMILY CRAL/TRIO domain 20 155 IPR036865 -
Cma05g00330 206 Gene3D - 15 168 IPR036865 -
Cma05g00330 206 PANTHER PROTEIN, PUTATIVE-RELATED 5 206 - -
Cma05g00330 206 CDD SEC14 24 158 IPR001251 -
Cma05g00330 206 Pfam Divergent CRAL/TRIO domain 31 166 IPR001251 -
Cma05g00330 206 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 5 206 - -
Cma05g00330 206 SMART sec14_4 15 164 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00330 - - - cpep:111805858 407.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00330 Cma-Chr5:1434551 Cma16g01270 Cma-Chr16:9679422 1.97E-75 dispersed
Cma05g00330 Cma-Chr5:1434551 Cma12g00723 Cma-Chr12:4038728 4.98E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g145 . . . . . . . . Cmo05g00333 . . . . . . . . Bhi04g00086 . . . . . . Cla08g01391 Cam08g1864 Cec08g1443 Cco08g1576 Clacu08g1558 . Cre08g1342 . . Cone17ag1433 Cone20ag0050 . . . . . . . . . . . . . . . . Cma05g00330 Car05g00277 . . . . . . . . . . . . . . . . . Lsi08g01282 . Chy03g01052 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002691 0 2 0 1 1 2 3 2 2 2 2 2 3 1 2 4 2 1 3 2 2 2 2 2 2 2 2 3 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00330 Cma_Chr05 FPKM 0.0 0.0 2.077645 3.739627 2.155086 1.538745 2.536121 0.0 0.0 0.167054