Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00334 ATGGCGGGTAATCCATCGGGCTTTAATCCTGATCGTATTCTTGCTCACAAATTTCCTGAGACAACATCCACCTATACAGAGAGAGATGTTGCACTCTATGCTCTGGGCATTGGAGCATGTGGTCGAGAAGCTGTGGATGCTGATGAGCTGAAATATGTTTACAATGAAAATGGGCAAGAATACATCGAGGTTTTGCCAACATTTGCTGCTCTATTTATCCACAAAACTATGGGAACGGGTCTGAACTTGCCAGGGCTGTCGTATGACCCAAAGCTCTTACTTCATGGTCAGCAATACATTGAATTGTACAAGCCACTGCCATCGAGGGGATATTTAGATAACAAAATCTCTCTTGCTGGGCTGCATGACAAAGGAAAAGCAGCTATCCTTGAGATTGAGACAAAAAGTTATGACAAAAGGTCTGGACAATTATTATGCATGAATCGGACAACTCTCTTTCTGCGAGGTGCTGGCGGATTCTCAAGTTCTTCTCACCCTTACTCCTACACAAACTACCCAAAAAATCAAGGATCAGCAGGAAAAATTCCAAAAACACAGCCTTTTATGGTGTTTGAGGATTGTACTCGACCATCTCAGGCAAGTTTTTCATGGGTTGCATTAGTGTATAGGTTATCAGGTGACTATAATCCTCTTCATTCCGATCCTATTGTTGCGAAGATTGCAGGGTTCTCGAAGCCAATACTACATGGATTATGTACATTGGGATTTGCTGTTCGGGCAGTAATCAAATGCGTGTGTAAAGGAGACTCGAGCAAAGTAAAATGCATATCAGGCAAGTTTCTTTTGCATGTGTACCCAGGTGAAATTTTGGTAACGGAGATGTGGCTTGAGGGGTCGAGGGTCCTTTATCAGACAAAGGTAAAGGAGCGCAACCGGGCTGTGCTATCTGGCTACGTGGATCTCCATCATGTAGCTTCGTCACTGTAA 948 43.57 MAGNPSGFNPDRILAHKFPETTSTYTERDVALYALGIGACGREAVDADELKYVYNENGQEYIEVLPTFAALFIHKTMGTGLNLPGLSYDPKLLLHGQQYIELYKPLPSRGYLDNKISLAGLHDKGKAAILEIETKSYDKRSGQLLCMNRTTLFLRGAGGFSSSSHPYSYTNYPKNQGSAGKIPKTQPFMVFEDCTRPSQASFSWVALVYRLSGDYNPLHSDPIVAKIAGFSKPILHGLCTLGFAVRAVIKCVCKGDSSKVKCISGKFLLHVYPGEILVTEMWLEGSRVLYQTKVKERNRAVLSGYVDLHHVASSL 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1447559 1455196 - CmaCh05G003340.1 Cma05g00334 294452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00334 315 PANTHER PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 2 9 314 - -
Cma05g00334 315 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 204 306 IPR029069 -
Cma05g00334 315 CDD HDE_HSD 183 309 - -
Cma05g00334 315 Gene3D Hotdog Thioesterase 18 314 - -
Cma05g00334 315 Pfam MaoC like domain 208 299 IPR002539 -
Cma05g00334 315 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 14 166 IPR029069 -
Cma05g00334 315 PANTHER PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 2-RELATED 9 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00334 K19658 ECH2; peroxisomal enoyl-CoA hydratase 2 [EC:4.2.1.119] - csv:101212798 561.992
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g139 . . . . . . . . Cmo05g00335 . . . . . Sed11g1117 . . Bhi04g00089 Tan02g2797 Cmetu03g2098 . Hepe10g0193 . Lcy13g1873 Cla08g01389 Cam08g1862 Cec08g1441 Cco08g1573 Clacu08g1556 . Cre08g1340 . . . Cone20ag0047 . . . Cme03g01547 . Blo18g00759 . Bda01g01549 Bpe02g01745 . Bma01g00713 . . . . . Cma05g00334 Car05g00278 . . . . . . . . . . . . . . . . . Lsi08g01279 . Chy03g01055 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011236 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00334 Cma_Chr05 FPKM 14.95927 18.073027 30.779343 31.263792 27.705906 29.76313 27.328276 47.587067 46.15905 50.685001