Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00336 ATGACTTCCTCGAGAGTTGTAAACTTTGATTATCTTGACTGTAGAATTGTTCGCACAGTGACTGCTTTTCAGAGCGGGAGACCATTTTCAACAGACTCTAACAAGGTCGACGAACCGTTCAAGGTCGAGGAAGCTGAAACAGTTAATGTTCCCCCACCTCCAACTGAGAAGTTGCTGGTGCTGGGTGGAAATGGATTTGTGGGTTCTCATATTTGTCAAGAAGCCATAAATCGTGGTCTTACAGTTGCTAGCCTTAGCAGGTCTGGTAGATCATCAATACGTGATTCTTGGGCGAACAATGTAATTTGGCATCAAGGAAACCTTCTTTCACCTGATTCACTGAATGAAGCTTTTGACGGTGTTACGGCTGTTATGTACAAGATCAATGGGACGGCAAATATCAATGCAATCAGAGTTGCTGCAGATAAAGGTGCAGTTTTTATGTGGCAGTACCAATCGCTTGCAGGTGTTAAGAGATATGTCTATATCTCTGCTGCTGATTTTGGCTTGGTTAATTACTTGCTACAGGGATATTATGAGGGAAAGCGAGCGGCTGAGACAGAACTCCTCACTAAATTTCCTTATGGAGGTATATTGCCTGTAGTACGAGTGATTTTGAGGCCGGGATTTATTTACGGGACCCGTAATGTCGGGAGCATGAAGTTACCTCTGGGAGTAATTGGCTCTCCTTTGGAAATGGTTCTTCAACACGCCAAACCACTACACCAGCTACCACTCGTTGGTCCTTTATTAACTCCTCCAGTAAGCGTGACTTCGGTGGCAAGGGTTTCTGTTCGAGCAGCAACGGACCCCGTCTTTCCTCCTGGCATCATCGACGTCTATGGCATTCAACGGAGTAATTCGAACGAGCTTCGTTCGAAGAGAGGGAAGACGAAGAAGATGAACCATAGCCAACAAGCAACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTGTCGGGCGTGACATGTGCTTACCTGGTTTGTTCTGTAGTAGTGTTATTGAACATGAAGACGGCCTTTTTAGAGTTTATAGTGTGCTTTCTAGGATCAGGCTTGTCGCTGTTGCTACACAGAAGTTCGTTGCAGATGTTGCAAGTGACGCTCTCCAGCATTGTAAGGCGAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGATGATCTCTCGAAGGCACTTCGTGAGTATGGCGTGAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACCGGAGTGGATTCTACTTCCAGAGAGGAATGA 1338 45.59 MTSSRVVNFDYLDCRIVRTVTAFQSGRPFSTDSNKVDEPFKVEEAETVNVPPPPTEKLLVLGGNGFVGSHICQEAINRGLTVASLSRSGRSSIRDSWANNVIWHQGNLLSPDSLNEAFDGVTAVMYKINGTANINAIRVAADKGAVFMWQYQSLAGVKRYVYISAADFGLVNYLLQGYYEGKRAAETELLTKFPYGGILPVVRVILRPGFIYGTRNVGSMKLPLGVIGSPLEMVLQHAKPLHQLPLVGPLLTPPVSVTSVARVSVRAATDPVFPPGIIDVYGIQRSNSNELRSKRGKTKKMNHSQQATGSRHDDDAALSEFLASLMEYTPTVGRDMCLPGLFCSSVIEHEDGLFRVYSVLSRIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1462726 1469993 - CmaCh05G003360.1 Cma05g00336 294454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00336 445 Gene3D - 57 328 - -
Cma05g00336 445 Pfam NAD(P)H-binding 62 189 IPR016040 -
Cma05g00336 445 PRINTS Transcription initiation factor TFIID 23-30kDa subunit signature 405 427 IPR003923 GO:0005634|GO:0006352
Cma05g00336 445 PRINTS Transcription initiation factor TFIID 23-30kDa subunit signature 359 381 IPR003923 GO:0005634|GO:0006352
Cma05g00336 445 PANTHER BNAANNG24990D PROTEIN 20 287 - -
Cma05g00336 445 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 57 282 IPR036291 -
Cma05g00336 445 Pfam Transcription initiation factor TFIID 23-30kDa subunit 363 388 IPR003923 GO:0005634|GO:0006352
Cma05g00336 445 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED 20 287 - -
Cma05g00336 445 MobiDBLite consensus disorder prediction 289 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00336 - - - csv:101207328 429.098
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01635 Cma-Chr2:9268775 Cma05g00336 Cma-Chr5:1462726 4.77E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g630 . . . . . . . . Cmo05g00338 . . Cma05g00336 . . . . . Bhi04g00078 Tan02g2789 . . . . Lcy13g1851 . . . . . . . . . Cone17ag0963 Cone20ag0304 . . . Cme03g01554 . . . . . . . . . . . . . . Car05g00280 Cpe11g00281 . . . . . . . . Cla08g01384 Cam08g1855 Cec08g1434 Cco08g1567 Clacu08g1551 . Cre08g1334 Lsi08g01268 . Chy03g01065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007661 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 0 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00336 Cma_Chr05 FPKM 28.292953 28.964048 30.69235 27.825691 28.469156 32.199654 28.401247 29.948631 28.966652 31.642426