Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00338 ATGGCTTCGAAGCTTTGTGATTCGTGTAAGTCCGCCACCGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTTTGCCTTGGTTGTGATTCCGAAGTTCACGCAGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGCTTTGTGAAGTCTGTGAGCAAGCTCCTGCTCATGTTACCTGCAAGGCCGATGCCGCTGCTCTCTGCCTCGCTTGTGACCACGATATTCATTCTGCTAATCCCCTCGCACGTCGTCACGAGCGAGTTCCGGTCACGCCGTTCTACGACACCTCCATCTCCGAGAACTCCCTCGCCGTCAAGCCTGGCGCTGCAATCAACTTCCTCGACGACCGCTACTTCTCCGATGTCGATGCCGATGCCGCTGATGTCAGTAGAGAAGAGGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTCCAGATTTAAACTCGGGGAAGTTTGTGTTTCCAGAAATGAATCCTTACCTAGATCTGGATTACGGCCATGTGGATCCGAAATTGGAAGCGCAAGAGCAGAATAGCTCCGGTGCCGATGGAGTTGTTCCTGATCAGACCAAAGGCGTCCATCTCTCATCAGTTAACGATCGCTGCTTCAACATAGACTTCCCCGGCGCCAAATCGTTCCCGTACGGTTTCAATCCTCAGTCAATCAGTCACAGTGTATCATCTTCGTCAGTCGAGGTTGGAGTCGTGCCAGACGGTAACGCGATGACGGATGTATCAAATCCGTACACAAAACCGTCGACGGAATCGTCTGTTCAACCGCTGCAAATTTCGCCGGCGGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATACGATACGCATCTCGTAAGGCGTACGCCGAGACGCGACCCCGAATCAAAGGACGGTTCGCCAAAAGGACGGACATCGAACTCGAGGTAGACCGAGTGAGTGGATACGGCGTCGTTCCGTCCTTCTAA 1014 53.65 MASKLCDSCKSATATLFCRADSAFLCLGCDSEVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCLACDHDIHSANPLARRHERVPVTPFYDTSISENSLAVKPGAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAIESPDLNSGKFVFPEMNPYLDLDYGHVDPKLEAQEQNSSGADGVVPDQTKGVHLSSVNDRCFNIDFPGAKSFPYGFNPQSISHSVSSSSVEVGVVPDGNAMTDVSNPYTKPSTESSVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELEVDRVSGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1477963 1479772 + CmaCh05G003380.1 Cma05g00338 294456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00338 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Cma05g00338 337 SMART bboxneu5 1 48 IPR000315 GO:0008270
Cma05g00338 337 SMART bboxneu5 49 91 IPR000315 GO:0008270
Cma05g00338 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 337 IPR045281 GO:0009909
Cma05g00338 337 CDD Bbox1_BBX-like 5 48 - -
Cma05g00338 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Cma05g00338 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Cma05g00338 337 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Cma05g00338 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Cma05g00338 337 Pfam CCT motif 276 318 IPR010402 GO:0005515
Cma05g00338 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 337 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00338 Cma12g00377 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00338 Cma-Chr5:1477963 Cma11g00415 Cma-Chr11:2035908 1.43E-108 dispersed
Cma12g00377 Cma-Chr12:1944414 Cma05g00338 Cma-Chr5:1477963 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35043 PF00643 zf-B_box 5.30E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00338 - - csv:101208063 609.757