Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00341 ATGGCGAACGACGAAGAGAGAGTTCTGGAGCACCAGCTAGAGGTTCAATTGCATGAGCAGAGAGAATCTCTCGCCGCCTTGCAAGATGCCTTAGCCTCCGATGCCTCCAATCCGGAGCTTCTCGAGGTTCATGATGAGCTTGTCCAAGCAATTAAAGATGCCGAGGAAGGGCTGCTTCACCTTAAGCGTTCTAGATTACTAAGAGAAGCAGATTTGGTGTTGTGTGGTCGTGATAGTAACGCAGCGGAGGATGTTAAGGTGGAGCCTCTTCATTCTACGGACGTCGAACCTGAATCACCAGAGGATCAGAGTTTCGTCGTTGGATCGAAATGCAGATTTCGGCACACTGATGGACGTTGGTATGACGGTGAAATTGTTGGATTGGATGGTTCTAATTCTGCGAAAATTTCTTTCCTCACTCCTACAACTGAAAATATGTTGATATGCAAGTTCTTCTTACAGCAAAGGTGTCGGTTTGGCACTAGCTGCCGCTTATCGCATGGAGTTGATATCCCTTTAACCTCTCTTAGGAGATATGCGCCAACAATTTGGAATCAGTCACTGACAGGGTCCAGTATCTGGGCTCTCTCGTCCAGGAATGGCATTTGGAGGCATGCTGAACTTGAATCTTGGGATGATGCACTACAAATTGCACAAGTTGTTTTTAAAGGTGATGGATCCTCTCAAAAGCTTGGACCGGAGGACATAGCGTTATCTGTGCGTGCTCAAATTAGTGATGGAGAAGAAAGTGATTCCAGCTTGGAAAAGTCTGACTCAAGTGATTATGAAGATGATGATTTGCAGGGTTTGGGATTCCTCGAAAGCTCTACACAGCAGAGGGGCATTCAGATGGAAACCACCATATTTGCAAAATGGGAGAACCATACCCGGGGAATCGCCTCCAAGATGATGGCTAATATGGGCTATCGAGAAGGAATGGGTTTGGGTGCATCTGGGCAGGGGATGCTAAATCCTATCCCTGTCAAAGTTCTTCCAGCAAAACAATCTCTTGATCATGCTCTAGAATCACAAAAGGAGAATAATACTAACGACGAGAATAATGGCAAGAAACGAAGTAGAGGCGGTAAGAGGAAACGTGATAAGAAGTTTGCTGCAGCAATGCAGGCAGCTAAAGAGGAAGAAGACTCAAGACCTGATGTCTTTAATCTTATCAACAACCACCTTGCAATGCATAATGGAGCACCGAATGATGGATCTGTTAAGAAACAGAAAGATAAAGGTTCAGCAGATGGAAAGAAGGTAGATAGACGAACTCTAATCGCGTACGATGGTGAGGTGAAAGACCTGCGAGTACGAATAGAGAAGCTTGAAGAAATGGTGAACAGAAATAAGAATGAGAAGGTTGTTTTCGAGGCTGCCTTAAGAAAGCTGAACGAGACTCGGAAAGCTTTGGCCGAGGCCGAGGCAGCTCATGCGTCTGCATCAAATGCAGTTACCAGCAGAGAAAAGGAAAAAAAATGGTTGAAGTCATTGTACTCGGTAACTGGGACATCGTTTCGAGCTTTGTCCAATCTTTTGTTAACCCATTCTCTGGCCATCAAGTTGGGTACCATAGCAGACGTTTACACTTGCAACAATATCCTAAGTGGGTATTGGAAATGCAAAGAGTTTCGATCTGCAGACGTACTGTTCGACGAAATGCCGCTGAGAGACTCTGTATCTTGGAACACGATGATCGCGGGGTATATTAACTCTGGAAACTTGGAGAATTCATGGGAAGTTCTTAAATGCATGAGAAGATTTGGTTTTGATCAAGATGAGTACACCTTTGGAAGCATGCTGAAGGGCATTGCTTGTGCTGGTATGCTTGATTTGGGTCAGCAAATACATTCTATGATCATTAAGATGGGTTTTGCTGGAAATGTATATGCAGGGAGTGCTCTTCTGGATATGTATGCGAAATGTGAGAGACTTGAGGATGCATATTTGACATTCCTAAATATATCTAAGCAGAACACTGTTTCGTGGAATGCAATGATTGCTGGATACGCACAAACGGGTGATCGCGAGACCGCGTTTTTGTTGTTAGATTGTATGGAGCAAGAAGGTGAGAAGGTTGATGATGGCTCATTTGCTCCTCTTTTGCCTTTACTAGATGATGCTGAGTTTTGTAGATTGACAAGGCAAGTTCATGGAAAAGTCATAAAACATGGATTGGAGTCTGCTAATACAATGTGTAATGCTTTGATCACTTCTTATTCAGAATGTGGATCCCTTGTCGATGCCAAAAGGGTTTTCAATTGTTCGGCGGGCGTTCGAGATTTGGTGTCGTGGAACTCCCTGTTGGGTGCTTTTTTGGTGCATAATCAGGAAGATCTTGCTTTTAAACTCTTGATTGATATGCAAGAACATGGTTTTGAACCAGATTTGTACTCTTACACAAGCATTATCAGTGCTTGTTTCAACAAAGAGCTTAGCAATAATGGGAAATCCCTGCATGGGATGGTCATTAAAAGAGGATTAGAACAATCAGTGCCAATTTCAAATGCATTGATATCTATGTATCTTAAATCAGACGGTGGTTCGATGAAGGAAGCTTTATGTATATTCGAATCCTTGGAGATTAAGGATCGTGTGTCGTGGAACTCGATCTTGACGGGATTATCACAAATGGGGTCGAGCGAAGATGCTGTGAAGTCGTTTCTGCATATGAGATCTTTAGCAATGGATATTGATCGGTATTCGTTTTCTGCTGTGCTCAAATCATGCTCAGATTTGGCCACCTTTCAATTGGGACAACAATTTCATGTCTTGGCGCTGAAATATGGTATGGATTCCAATGAGTTTGTTTCAAGTTCATTAATCTTCATGTATTCAAAGTGTGGGATTATGGAAGATGCTAAAAGATCATTTGAAGGAGCTTCAAAAAGCTCTTCAATCACCTGGAATGCACTCATGTTTGGCTATGCACAACATGGGCAATGCCATGTTGCATTAGACCTCTTCTTTCTAATGGAAGAGAAGAAGGTGAAAATGGATCACATAACATTCGTTGCAGTTCTGACCGCTTGTAGCCATATCGGTTTAGTCGAACGGGGCTGCGAATTCTTACGATGTATGGAATCTGATTATGGGGTTCCTCCACGAATGGAGCATTATGCTTGTGCAGTTGATCTATATGGCCGTTCTGGGCGTCTTGATGAAGCCAAGGCCTTGATTGAGGCAATGCCATTCAAGCCGAACGCGATGGTGTGGAAGACGTTCTTGGGGGCATGTCGTTCTTGTGGGAACGTTGAGTTAGCTTGTCAGGTTGCAAGGCATCTACTAGAGATGGAGCCTGAAGAGCATTGCACTTATGTTCTTCTCTCAAACATGTATGGAGATCTAATGAGATGGGAGGAGAAGGCTCAGGTGAAGAGGTTAATGAAGGAAAGAGGAGTTAAGAAAACGCCTGGTTGGAGTTGGATTGAAGTTAAGAACAAGGTTCATGCTTTCATTGCTGAAGATCGTTCTCATCCCAGTTGCCAACAGATATACTTTTTGCTGGAAGTTCTTATGGAGGAAATCACAAGAATTGAAGCTGCTGCTGATGGTTTTGAGAGTTTTTTGGAGCAGGAAGAGCTAAGTTATGCATATGCATAA 3603 43.35 MANDEERVLEHQLEVQLHEQRESLAALQDALASDASNPELLEVHDELVQAIKDAEEGLLHLKRSRLLREADLVLCGRDSNAAEDVKVEPLHSTDVEPESPEDQSFVVGSKCRFRHTDGRWYDGEIVGLDGSNSAKISFLTPTTENMLICKFFLQQRCRFGTSCRLSHGVDIPLTSLRRYAPTIWNQSLTGSSIWALSSRNGIWRHAELESWDDALQIAQVVFKGDGSSQKLGPEDIALSVRAQISDGEESDSSLEKSDSSDYEDDDLQGLGFLESSTQQRGIQMETTIFAKWENHTRGIASKMMANMGYREGMGLGASGQGMLNPIPVKVLPAKQSLDHALESQKENNTNDENNGKKRSRGGKRKRDKKFAAAMQAAKEEEDSRPDVFNLINNHLAMHNGAPNDGSVKKQKDKGSADGKKVDRRTLIAYDGEVKDLRVRIEKLEEMVNRNKNEKVVFEAALRKLNETRKALAEAEAAHASASNAVTSREKEKKWLKSLYSVTGTSFRALSNLLLTHSLAIKLGTIADVYTCNNILSGYWKCKEFRSADVLFDEMPLRDSVSWNTMIAGYINSGNLENSWEVLKCMRRFGFDQDEYTFGSMLKGIACAGMLDLGQQIHSMIIKMGFAGNVYAGSALLDMYAKCERLEDAYLTFLNISKQNTVSWNAMIAGYAQTGDRETAFLLLDCMEQEGEKVDDGSFAPLLPLLDDAEFCRLTRQVHGKVIKHGLESANTMCNALITSYSECGSLVDAKRVFNCSAGVRDLVSWNSLLGAFLVHNQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNKELSNNGKSLHGMVIKRGLEQSVPISNALISMYLKSDGGSMKEALCIFESLEIKDRVSWNSILTGLSQMGSSEDAVKSFLHMRSLAMDIDRYSFSAVLKSCSDLATFQLGQQFHVLALKYGMDSNEFVSSSLIFMYSKCGIMEDAKRSFEGASKSSSITWNALMFGYAQHGQCHVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVERGCEFLRCMESDYGVPPRMEHYACAVDLYGRSGRLDEAKALIEAMPFKPNAMVWKTFLGACRSCGNVELACQVARHLLEMEPEEHCTYVLLSNMYGDLMRWEEKAQVKRLMKERGVKKTPGWSWIEVKNKVHAFIAEDRSHPSCQQIYFLLEVLMEEITRIEAAADGFESFLEQEELSYAYA 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1491372 1498040 - CmaCh05G003410.1 Cma05g00341 294459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00341 1200 Gene3D - 106 180 - -
Cma05g00341 1200 ProSiteProfiles Zinc finger C3H1-type profile. 143 170 IPR000571 GO:0046872
Cma05g00341 1200 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 965 999 IPR002885 -
Cma05g00341 1200 PANTHER OS01G0913400 PROTEIN-RELATED 586 1184 - -
Cma05g00341 1200 MobiDBLite consensus disorder prediction 342 358 - -
Cma05g00341 1200 Coils Coil 1 30 - -
Cma05g00341 1200 PANTHER OS01G0913400 PROTEIN-RELATED 515 590 - -
Cma05g00341 1200 MobiDBLite consensus disorder prediction 405 419 - -
Cma05g00341 1200 MobiDBLite consensus disorder prediction 342 419 - -
Cma05g00341 1200 Coils Coil 426 484 - -
Cma05g00341 1200 PANTHER BNAA02G27730D PROTEIN 515 590 - -
Cma05g00341 1200 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 659 693 IPR002885 -
Cma05g00341 1200 TIGRFAM PPR: pentatricopeptide repeat domain 661 694 IPR002885 -
Cma05g00341 1200 TIGRFAM PPR: pentatricopeptide repeat domain 967 1000 IPR002885 -
Cma05g00341 1200 TIGRFAM PPR: pentatricopeptide repeat domain 560 591 IPR002885 -
Cma05g00341 1200 TIGRFAM PPR: pentatricopeptide repeat domain 763 796 IPR002885 -
Cma05g00341 1200 Gene3D Tetratricopeptide repeat domain 1017 1166 IPR011990 GO:0005515
Cma05g00341 1200 MobiDBLite consensus disorder prediction 368 387 - -
Cma05g00341 1200 Pfam G-patch domain 296 338 IPR000467 GO:0003676
Cma05g00341 1200 Pfam CCCH-type zinc finger 148 168 IPR041367 -
Cma05g00341 1200 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 864 898 IPR002885 -
Cma05g00341 1200 Pfam E motif 1084 1144 IPR046848 -
Cma05g00341 1200 ProSiteProfiles G-patch domain profile. 296 342 IPR000467 GO:0003676
Cma05g00341 1200 MobiDBLite consensus disorder prediction 242 268 - -
Cma05g00341 1200 Pfam PPR repeat family 966 1012 IPR002885 -
Cma05g00341 1200 Pfam PPR repeat family 558 604 IPR002885 -
Cma05g00341 1200 Pfam PPR repeat family 761 808 IPR002885 -
Cma05g00341 1200 SMART c3hfinal6 143 169 IPR000571 GO:0046872
Cma05g00341 1200 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Cma05g00341 1200 Gene3D Tetratricopeptide repeat domain 457 608 IPR011990 GO:0005515
Cma05g00341 1200 Gene3D Tetratricopeptide repeat domain 818 918 IPR011990 GO:0005515
Cma05g00341 1200 Gene3D Tetratricopeptide repeat domain 919 1016 IPR011990 GO:0005515
Cma05g00341 1200 Gene3D Tetratricopeptide repeat domain 706 817 IPR011990 GO:0005515
Cma05g00341 1200 Gene3D Tetratricopeptide repeat domain 609 705 IPR011990 GO:0005515
Cma05g00341 1200 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 761 795 IPR002885 -
Cma05g00341 1200 Pfam PPR repeat 866 893 IPR002885 -
Cma05g00341 1200 Pfam PPR repeat 1043 1063 IPR002885 -
Cma05g00341 1200 Pfam PPR repeat 732 754 IPR002885 -
Cma05g00341 1200 Pfam PPR repeat 661 690 IPR002885 -
Cma05g00341 1200 Pfam PPR repeat 529 555 IPR002885 -
Cma05g00341 1200 PANTHER BNAA02G27730D PROTEIN 586 1184 - -
Cma05g00341 1200 SMART G-patch_5 294 340 IPR000467 GO:0003676
Cma05g00341 1200 Pfam E+ motif 1149 1176 IPR046849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00341 - - - cmax:111492460 1424.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00341 Cma-Chr5:1491372 Cma15g00212 Cma-Chr15:1026774 2.71E-11 dispersed
Cma12g00371 Cma-Chr12:1917064 Cma05g00341 Cma-Chr5:1491372 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g612 . . . . . . . . Cmo05g00344 . . Cma05g00341 . . . . . Bhi04g00070 . . . . . Lcy13g1845 . . . . . . . . . . Cone20ag0308 . . . Cme03g01561 . . . . . . . . . . . . . . Car05g00286 Cpe11g00286 . . . . . . . . Cla08g01378 . . . . . . Lsi08g01262 . Chy03g01071 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011939 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 0 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35044 PF13041 PPR_2 1.20E-07 CL0020 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00341 Cma_Chr05 FPKM 1.937586 2.621141 3.546594 3.698114 4.631866 4.978358 4.820943 4.857453 5.412758 5.237388