Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00342 ATGGAGCTCACACCTCAGCAGCTGATCGCCTACAATGGCACCGACCCATCGAAGCCCATCTATGTGGCTTTGAAGGGCCGCATCTTCGACGTCACAACAGGCGTTTCTTTCTACGGCCCCGGTGGCGCCTACGCCATGTTCGCTGGCAAGGACGCAAGCAGAGCTCTGGCCAAGATGACCAAGAATGAGGAGGACATCAATTCTTCGCTCGAAGGCCTCTCCGAGAAAGAGATCGGTGTTCTCAACGACTGGGAGAAGAAATTTGAAGCTAAGTACCCTATTGTTGGTCGCGTTGTTTCTTAA 303 53.14 MELTPQQLIAYNGTDPSKPIYVALKGRIFDVTTGVSFYGPGGAYAMFAGKDASRALAKMTKNEEDINSSLEGLSEKEIGVLNDWEKKFEAKYPIVGRVVS 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1498981 1499283 + CmaCh05G003420.1 Cma05g00342 294460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00342 100 Pfam Cytochrome b5-like Heme/Steroid binding domain 4 98 IPR001199 -
Cma05g00342 100 PANTHER MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED 2 99 - -
Cma05g00342 100 SMART Cyt_b5_2 3 99 IPR001199 -
Cma05g00342 100 Gene3D - 1 100 IPR036400 -
Cma05g00342 100 PANTHER CALCUTTA CUP-RELATED 2 99 - -
Cma05g00342 100 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 2 99 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00342 K17278 PGRMC1_2; membrane-associated progesterone receptor component - pvy:116138023 182.185
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00342 Cma-Chr5:1498981 Cma06g00059 Cma-Chr6:332585 1.29E-37 dispersed
Cma05g00342 Cma-Chr5:1498981 Cma19g00420 Cma-Chr19:5097274 9.17E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g598 . . Bda01g00658 . . Bpe02g00531 . Bma01g02176 Cmo05g00346 . . Cma05g00342 . . Sed11g1134 . . Bhi04g00061 Tan02g2775 Cmetu03g1614 . . . Lcy13g1841 . . . . . . . Cone1ag1152 Cone5ag0861 Cone14ag0095 Cone15ag0101 . . . Cme03g01566 . . . . . . . . . . . . . . Car05g00288 Cpe11g00288 . . . . . . . . Cla08g01375 Cam08g1844 Cec08g1422 Cco08g1555 Clacu08g1539 . Cre08g1322 Lsi08g01257 . Chy03g01077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005082 1 2 0 1 1 2 1 2 2 1 2 2 1 1 2 1 2 2 1 2 2 1 1 0 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00342 Cma_Chr05 FPKM 158.267319 164.987717 228.91864 220.012268 189.894958 228.980057 169.710373 347.962311 378.020111 337.456635