Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00343 ATGACGGCATCGCAAATTGAGCGTGAGATTTGCGTAGGACAGAGAGCCAACCAACCTTTAAACACTGCATTGATGGTGGAGGAAGATAAGTTTAATGTCTTTGATGAAGATTTGGAAGAAGATGAACTCCAGAAAGAGTCTAGTGTCTCTATTGGCACGGCGGTTTATTGGTTCAAAGCACTTGTTTCTGAAATGCATTGGAGTTTTGTATTTGGAGTAGTGATTGTTTATGGGATTAGTCAAGGATTGGGCGGTGCACTTAACCGTGTCGCCACCGAGTACTACATGAAGGATGTTCAGAAAGTGCAGCCTTCTGAAGCACAGGTTTATTCTGGCATTACCTCAATTCCATGGATGGTTAAGCCTATTTGGGGTCTTTTCACTGACTTAGTCCCTGTTCTTGGATACCATCGGCGGCCTTACTTTGTGTTTGCAGGTCTTCTTGGTGTTATCTCCTTGCTTTCATTAGCCTTACACCAGAAGCTGCATCTCCTACTAGCGATTTTGTTGTTAACAGCTGGAAGTGCTGGTGTAGCCATAGCAGATGTCACCATAGATGCATGTGTAGCACAGAACAGTAGCATTCATCCGACCCTTGCAGCTGATTTGCAAAGCTTGTGCGCTTTGAGTTCTTCGATCGGAGCATTACTCGGGTTCTCTATTAGCGGTATCCTTGTTCATCTGATAGGCTCTAAGGGAGTGTATGGTTTGTTAGCAATACCTGCGGGGCTTGTCTTTTTGGTTGGAATGATACTCAATGAACCCCATATGCCAGACTTCAATTACAGACAGGTCAACGAAAAGTTTGTCGGTGCTGGGAAGGCTATGTGGACGACGTTAAAGAGCCCGAACGTCTGGAGGCCATGTCTCTATATGTATCTATCTCTTGCATTGTGCCTTGACATCAATGAGGGACTGTTTTATTGGTACACAGACTCCAAAAATGGTCCAAAATTCTCTCAGGAAAATGTTGGTTTCATTTTCTCAATCGGTTCAGTTGGGTCCCTTTTTGGAGCTTTATTGTATCAATATGTTCTCAAGGACCATCAGTTCAGAGACTTGCTTTTTTGGACTCAGATGATTTACAGTTTATCTGGGATGCTAGATTTCTTGCTGGTTTTACGTTTGAACTTAAAAATTGGAATGCCAGATTACTTCTTCATTGTGATAGATGAGAGTGTTCATCAGCTTATTAACAGGCTAAAATGGATGCCTCTTCTAGTCCTCAGCTCCAAGCTTTGCCCCAGAGGCATTGAGGGCACGTTCTTTGCTTTGCTTATGTCGATCGACAACGTTGGACTTCTTTCAGCATCATGGGGTGGCGGTTTCCTACTCCATATCCTTAAAGTTACTCGAACGAAATTCAGTAATCTATGGCTAGCCATTTTGATAAGGAATTTCTTGAGACTCACTCCCCTTTGCATGTTGTTTTTGGTGCCTAGGGGTGATCCGAATTCTTCGATTCTTCTAACCGAACTTCCAAGATCGGACGTCGATAATGAGACTTGTGAAGAAGCTGATAACATTGAACTGGTTTCCCTTGTCAATGGCATAAACATAGATAACCAGAAAGAAGCTTTTTGA 1584 42.99 MTASQIEREICVGQRANQPLNTALMVEEDKFNVFDEDLEEDELQKESSVSIGTAVYWFKALVSEMHWSFVFGVVIVYGISQGLGGALNRVATEYYMKDVQKVQPSEAQVYSGITSIPWMVKPIWGLFTDLVPVLGYHRRPYFVFAGLLGVISLLSLALHQKLHLLLAILLLTAGSAGVAIADVTIDACVAQNSSIHPTLAADLQSLCALSSSIGALLGFSISGILVHLIGSKGVYGLLAIPAGLVFLVGMILNEPHMPDFNYRQVNEKFVGAGKAMWTTLKSPNVWRPCLYMYLSLALCLDINEGLFYWYTDSKNGPKFSQENVGFIFSIGSVGSLFGALLYQYVLKDHQFRDLLFWTQMIYSLSGMLDFLLVLRLNLKIGMPDYFFIVIDESVHQLINRLKWMPLLVLSSKLCPRGIEGTFFALLMSIDNVGLLSASWGGGFLLHILKVTRTKFSNLWLAILIRNFLRLTPLCMLFLVPRGDPNSSILLTELPRSDVDNETCEEADNIELVSLVNGINIDNQKEAF 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1502821 1506554 + CmaCh05G003430.1 Cma05g00343 294461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00343 527 SUPERFAMILY MFS general substrate transporter 70 464 IPR036259 -
Cma05g00343 527 Gene3D MFS general substrate transporter like domains 64 467 IPR036259 -
Cma05g00343 527 Pfam BT1 family 289 483 IPR039309 -
Cma05g00343 527 Pfam BT1 family 81 248 IPR039309 -
Cma05g00343 527 CDD MFS_FBT 72 477 - -
Cma05g00343 527 PANTHER FOLATE-BIOPTERIN TRANSPORTER 2-RELATED 34 519 - -
Cma05g00343 527 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 34 519 IPR039309 -
Cma05g00343 527 TIGRFAM fbt: folate/biopterin transporter 56 483 IPR004324 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00343 - - - csv:101209519 892.493
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00343 Cma12g00369 CCT
Cma05g00343 Cma12g00369 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00343 Cma-Chr5:1502821 Cma06g01399 Cma-Chr6:9046338 4.36E-53 dispersed
Cma05g00343 Cma-Chr5:1502821 Cma05g00346 Cma-Chr5:1528287 1.32E-139 proximal
Cma12g00369 Cma-Chr12:1902458 Cma05g00343 Cma-Chr5:1502821 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g596 . . . . Bpe02g01267 . . . Cmo05g00347 Cmo12g00322 . Cma05g00343 . Car12g00352 Sed03g1651 Cpe07g00327 . Bhi04g00059 Tan02g2774 Cmetu03g2123 . Hepe10g0210 . Lcy13g1840 . . . . . . . . . . . . . . Cme03g01568 . . Bda01g01018 . . . Bma01g01261 . . . . . Cma12g00369 . Car05g00289 Cpe11g00289 . . . . . . . . Cla08g01373 Cam08g1842 Cec08g1420 Cco08g1553 Clacu08g1537 . Cre08g1320 Lsi08g01256 . Chy03g01078 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004718 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 2 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00343 Cma_Chr05 FPKM 7.317297 9.87303 5.580512 5.754785 6.339199 6.380895 7.452288 5.517418 5.498973 6.376697