Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00344 ATGGTAGAGGAAGAAATTGATGCAAACATGAGTTCATTTTCCATCACTCGGAAAAAGACTCCTTTCCAAAAGCACAGAGAGGAGGAAGAGGCAAAGAAGAAGAGAGAGGAGGATGAAACTGCCCGATTGTATGCGGAATTTGTGGAGTCATTTCAAGGAGAAAATGCACCTGGGTCCAAGACTTTTGTTCGTGGAGGAACTATCAATCCCAACGAGAAATTGAAGAGTGAATCTGAGGGTGAAAAGGCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGATATGTGCCATCTTTCATTCCACCTCCATTGGCATCCAAGGGAAAAGAATCTGACAAGAAGGAGCTGGACAAGCCAAAGGAGAAAGAAAAGGGGAAGTCTAGGAACATCGATCATTTTATGGAGGAGCTGAAGCATGAGCAAGAGATGAGGGAAAGACGAAATCAGGATCGCGAACATTGGCGTGAAGGACGCCTTGGAGAAAACTTAACACCATCTAGTCGTTTTGATGAACTGCCGGATGACTTTGATCCTAGTGGAAAGTTCCCTGGATCATTTGATGATGGAGATCCTCAAACAACTAACCTTTATGTAGGAAATTTATCTCCTCAGGTTGATGAGAATTTTCTCCTTCGAACTTTTGGAAGATTTGGACCAATTGCTAGTGTGAAGATAATGTGGCCAAGGACAGAGGAGGAGCGAAGACGGCAAAGAAATTGTGGATTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCTGCAAAGGATGAAATGCAAGGAGTTGTTGTTTATGGGTATGAACTGAAAATCGGATGGGGAAAGTCTGTCGCTCTTCCATCCCAAGCATTACCTGCGCCTCCTCCAGGTCATATGGCCATTAGAAGTAAGGAGGGTGGCACTGTTATCTTATCTGGCTCATCAGGACCGCCAGTTACTTCTGTCGCAAACCAAAATTCTGAGCTGGTTCTAACACCCAACATTCCTGATATTACTGTCGAACCACCTGAGGAGGATCATCTCCGCCATGTCATTGACACTATGGCTCTATATGTTCTGGATGGAGGTTGTGTCTTTGAACAAGCTATTATGGAGAGGGGTCGGGGTAATCCTCTCTTCAACTTCTTGTTTGAGCTTGGTTCAAAAGAACATACATACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACTGAACCTTTTATCATGATAACTGGTAGTGGAAGATGGGTTCCACCGCCTCTTCCAACTGCTAAAAGCCCAGAGCTTGAGGAGTCTGGTCCCACATATGCTGCTGGAAGAACCAGACGCGTGGAGCTTGAAAGAACATTGACTGATTCACAAAGGGATGAGTTTGAGGACATGCTTCGGGCACTGACACTAGAAAGGAGTCAGATAAAGGAAGCAATGGGGTTCGCATTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTCTAACAGAATCTTTAACGCTTAGAGAAACTCCTATTCCAACCAAAGTTGCTAGGTTGATGCTTGTGTCTGATATCCTTCATAACAGTAGTGCTCCCGTTAAGAATGCATCTGCATACCGTACTAAATTTGAAGCAACATTACCTGACATCATGGAGAGCTTCAATGATCTATATCGTAGCATAACAGGGAGAATTACGGCAGAGGCCCTCAAGGAACGAGTGCTGAAATTATTGCAAGTATGGTCAGATTGGTTTCTGTTCTCAGATGCTTATGTGAATGGATTGCGAGCCACGTTCCTTCGCTTAGGAAACTCTGGTGTGACCTCCTTTCATTCATTATGTGGCGATGCCCCAGAGATTGAACGGCAGGCCAATTGTGAAGAGTTAGGAGATGGGAGCAAAATCAATCAAGATGCTGAATTGGCAATGGGCAAAGGAGGAGCTATGAAGGAGTTAATGAATCTTCCCTTCGGAGAATTGGAAAGAAGGTGTAGGCATAATGGGTTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGTTTGCTAAGTCTTGAAGAGGCAGAAAAACAGAGTGGATATGAACTTGATGAAGACTTAAAATATAGTAATTCTCGTACTGTAAGATATTCAAGTAGTTCAAAGGAAACTAAGTTTGAACGAAATCCAGCCGAAATTTCTGGTTGGAACCATTTTGGAGACGACGAGGCAAATTTCCAGAGGATGGGTTCTGTACCTATGGCTCAAACTCTTTCAATTCCACAGCCTGAACTAAAAAGTTTCACCAAGTCAGGGAAAAATGATCCCGTTCTGCCGGCCTCTAAATGGGCTAGGGAGGATGATGAAAGTGACAATGAGCAAAAAGGAGGTCCTAGGGGTCTCGGGTTGAGCTATTCATCTTCAGGAAGTGAAAATGCAGGAGATGGTCTCAGTAAATCTGATGAGATGGAGATTACTACGGAAGCAAGTGTCCTTATGCAGCCTGATAGTGGGTTGAATGAAGAGCAGAGACAAAAGTTAAGGCGTGTTGAGGCGGCTTTGATAGAATATCGTGAATCTTTGGAGGAACGAGGCATCAAAAGTGTAGAGGAAATAGAGAGGAGAGTTTTGATTTATCGAAAACAACTAGAATCTGAATATGGAATGTCAGATTCCAATCAGGCTGCATCAAGGAAGAAGAGGAGGGATAGAGCAGATGATAGCCATGATTCATCAAGGAAGCTGCAGCGTAGCCAGAGCCATAGTGATAGCCCAGTACGAAAGTCATCCAACCGAGATAGGGACAGAGAAAATGACATTGACAGGGAGCGAGAAAGATCACGAGACAGGGACCGCGAAAAGAGTGGAAGCAGAGAAAGGGATGACCACGACCGAGATAGAGGTAAAGAAAGAGATAGGGATAGAAGAAGACGAGCAAAATGA 2901 44.23 MVEEEIDANMSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGENAPGSKTFVRGGTINPNEKLKSESEGEKAKDGVSVPKKGSRYVPSFIPPPLASKGKESDKKELDKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQDREHWREGRLGENLTPSSRFDELPDDFDPSGKFPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYGYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGGTVILSGSSGPPVTSVANQNSELVLTPNIPDITVEPPEEDHLRHVIDTMALYVLDGGCVFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPPLPTAKSPELEESGPTYAAGRTRRVELERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLRETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKLLQVWSDWFLFSDAYVNGLRATFLRLGNSGVTSFHSLCGDAPEIERQANCEELGDGSKINQDAELAMGKGGAMKELMNLPFGELERRCRHNGLSLVGGREMMVARLLSLEEAEKQSGYELDEDLKYSNSRTVRYSSSSKETKFERNPAEISGWNHFGDDEANFQRMGSVPMAQTLSIPQPELKSFTKSGKNDPVLPASKWAREDDESDNEQKGGPRGLGLSYSSSGSENAGDGLSKSDEMEITTEASVLMQPDSGLNEEQRQKLRRVEAALIEYRESLEERGIKSVEEIERRVLIYRKQLESEYGMSDSNQAASRKKRRDRADDSHDSSRKLQRSQSHSDSPVRKSSNRDRDRENDIDRERERSRDRDREKSGSRERDDHDRDRGKERDRDRRRRAK 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1506679 1524069 - CmaCh05G003440.1 Cma05g00344 294462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00344 966 MobiDBLite consensus disorder prediction 766 781 - -
Cma05g00344 966 MobiDBLite consensus disorder prediction 881 959 - -
Cma05g00344 966 MobiDBLite consensus disorder prediction 74 89 - -
Cma05g00344 966 PANTHER - 12 961 - -
Cma05g00344 966 SUPERFAMILY Surp module (SWAP domain) 320 399 IPR035967 GO:0003723|GO:0006396
Cma05g00344 966 Pfam Surp module 342 394 IPR000061 GO:0003723|GO:0006396
Cma05g00344 966 ProSiteProfiles CID domain profile. 451 596 IPR006569 -
Cma05g00344 966 SMART 558neu5 458 593 IPR006569 -
Cma05g00344 966 Pfam cwf21 domain 826 872 IPR013170 -
Cma05g00344 966 Pfam CID domain 458 586 IPR006569 -
Cma05g00344 966 SUPERFAMILY RNA-binding domain, RBD 188 286 IPR035979 GO:0003676
Cma05g00344 966 Gene3D - 452 596 IPR008942 -
Cma05g00344 966 SUPERFAMILY ENTH/VHS domain 453 592 IPR008942 -
Cma05g00344 966 Gene3D - 106 278 IPR012677 -
Cma05g00344 966 MobiDBLite consensus disorder prediction 787 801 - -
Cma05g00344 966 Coils Coil 826 846 - -
Cma05g00344 966 MobiDBLite consensus disorder prediction 866 966 - -
Cma05g00344 966 Gene3D Surp module 330 399 IPR035967 GO:0003723|GO:0006396
Cma05g00344 966 SMART rrm1_1 196 272 IPR000504 GO:0003723
Cma05g00344 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 276 IPR000504 GO:0003723
Cma05g00344 966 MobiDBLite consensus disorder prediction 20 39 - -
Cma05g00344 966 MobiDBLite consensus disorder prediction 809 826 - -
Cma05g00344 966 CDD RRM_SR140 194 277 IPR035009 -
Cma05g00344 966 MobiDBLite consensus disorder prediction 54 171 - -
Cma05g00344 966 Gene3D - 825 876 - -
Cma05g00344 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 270 IPR000504 GO:0003723
Cma05g00344 966 PANTHER RNA PROCESSING PROTEIN LD23810P 12 961 - -
Cma05g00344 966 MobiDBLite consensus disorder prediction 751 830 - -
Cma05g00344 966 Coils Coil 456 476 - -
Cma05g00344 966 ProSiteProfiles SURP motif repeat profile. 344 387 IPR000061 GO:0003723|GO:0006396
Cma05g00344 966 Coils Coil 26 46 - -
Cma05g00344 966 MobiDBLite consensus disorder prediction 108 160 - -
Cma05g00344 966 SMART surpneu2 342 396 IPR000061 GO:0003723|GO:0006396
Cma05g00344 966 MobiDBLite consensus disorder prediction 1 39 - -
Cma05g00344 966 SMART cwf21_2 825 874 IPR013170 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00344 K12842 SR140; U2-associated protein SR140 - csv:101209274 1641.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00344 Cma12g00368 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00344 Cma-Chr5:1506679 Cma15g01121 Cma-Chr15:7143923 4.15E-09 dispersed
Cma12g00368 Cma-Chr12:1880861 Cma05g00344 Cma-Chr5:1506679 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00344 Cma_Chr05 FPKM 15.082177 15.375583 15.2872 16.196959 20.788509 19.728386 22.43815 13.699646 14.765995 12.804806