Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00348 ATGAAACAGGGAATTGTTCATGATTTGATACTGCAGACAAAGGCGGCTGCAATTTATGATGGTTTTTTCCAGTTACAGAGAGGAGAAGAAGAAGAAGAGGTCTATTTCTCTGTCTGCAATGCTGCTACTAGCCTGCTACTATCAGTTCTTGTAGTAACGTGCTATCTACGGAGGAAATCTCTGAAAATCCGCCATTTCTATTATAGGCTTGAGGCTTCTTACACTGGGTTTGTTTCGGGCCAGTCATTGCTCGACTTGATGAAGTTCATGAAGTTAGGATCGAAACCGGACGCTTTTCTAGCCGATGGAAAAACTACTCGGTATGTTTCATCAGAATTGCCAACGGACGTTACCATTTTTGTCGGCGAAGTAAAGTTTCGTGTTCATAAGTTTCCTCTGTTGTCCAAGAGCAATTGCCTGCAAAAACTAGTATCAAAAGCCAATGAGGAGAATTCCGAAGAAATTCATCTGATTGATTTTCCTGGTGGACCTAAGGCATTTGAAATATGTGCAAAGTTTTGCTATGGAATCACTGTTACTCTTAATGCCTATAATGTTGTGGCTGCTCGTTGTGCTGCTGAATTCCTCGAAATGACCGAAGATATCGAAAAAGGAAACCTTGTATTCAAGATCGAGGTGTTCTTAAACTCTAGCATCTTTCGTAGTTGGAAAGACTCCATCATTGTGCTCCAAACATCCAAATCTCTTCTTCCATGGTCTGAAGATTTGAACATTGTAGGGAGATGTATCGATTCGATTGCCTCGAAAACTTCTGTGGACCCTGCAAATATCACATGGTCTTACACATATAACAGGAAGCTAGCAGAGGTAGATAGAATTGTAGATGATGGAATGAAGGGTCAAAAGAAAATTGACTGTGTACCAAACGACTGGTGGGTTGAAGATGTTTGTGAGCTAGAGATTGATCTGTATAGGCGTGTTATGATTGCTGTGAAATCAAAGGGAAGAATGGACGGTTCTGTAATTGGGGAGGCGCTTAAAACTTATGCTGTTAGATGGCTACCAGACACTGTTAATGCTTTGGCCTCTGATGCTCATATTAAGAGGAACAGGTCTCTCATTGAAACAATCATTTGCTTATTGCCATCCGACAGAACCACAGGTTGCTCATGCGGTTTCTTGCTCAAACTCATGAAGGTTGCCATTTTGGTTGGAGCAGATGATGCATCGAGGGAAGATTTGGTGAAGAGAATTAGCTTGAAACTACATGAGGCTTCAGTCAAAGATTTATTGATTCTTGCACAATTTCCTCAAATTACAAGATATGATGTTGACTTGGTTCATAGGATTGTGAATCAGTATTTTGTTCATCATAAGTTTAACCGAGATTCAGACGATATTGAGCGGAGCGAGAAAGGAGCTGATAATCTTTTACTGGGGCATGGATCCTCATTGAATGTAGCTAAATTGATTGATGAGTACCTTGCTGAAATTGCAGATGACCCAAATCTCTTACTCGCTAGGTTCATCGACTTGTCACAGTCGATTCCTGAATTTGCAAGGCCAATACATGATAGATTGTATAAAGCAATCGACATTTATCTTAAGGTTCACCCAAATTTGACAAAAGCTGATAAGAGGAAGATATGTGGTCTGATTGATGTCAAGAAACTTACAACGGAGGCGTCGATGCATGCAGCGCAGAATGAACGGCTCCCACTTAGAGTTGTCGTTCAAGTTCTCTTCTTTGAACAGGTTAGAGTCTCAGCTGGTGTCGAAGCACAAAACAACAACTCTCGAGACTCGTCGAGTGCAATGACGAGCATAGACGAAGAATGCCCCAAGGAGTTGGACAACAGTAAGTCCCTAAAACACAATGTGGGGCACATGACGATAAATGAAGACATTCAGAAAACTCAGTTGGCTAAGAAGAGCAGCAAGAACAGTAGAAGTGGCATGAAGTTGTTGCCTTCAAGGTCGAGGAGAATTTTCGATAAGTTATGGATCGTGGGTAAAGGTCACGGGGAAGGTCGGAGTCCCGAAATGTCGGGGAGTTCTCAGAGTCCAACTTCAGTGGTTCCTGTGCATATGAAGTCTTCTGGTACGTATGCAAGACAGAGGCGGCACTCAATATCTTAG 2100 42.0 MKQGIVHDLILQTKAAAIYDGFFQLQRGEEEEEVYFSVCNAATSLLLSVLVVTCYLRRKSLKIRHFYYRLEASYTGFVSGQSLLDLMKFMKLGSKPDAFLADGKTTRYVSSELPTDVTIFVGEVKFRVHKFPLLSKSNCLQKLVSKANEENSEEIHLIDFPGGPKAFEICAKFCYGITVTLNAYNVVAARCAAEFLEMTEDIEKGNLVFKIEVFLNSSIFRSWKDSIIVLQTSKSLLPWSEDLNIVGRCIDSIASKTSVDPANITWSYTYNRKLAEVDRIVDDGMKGQKKIDCVPNDWWVEDVCELEIDLYRRVMIAVKSKGRMDGSVIGEALKTYAVRWLPDTVNALASDAHIKRNRSLIETIICLLPSDRTTGCSCGFLLKLMKVAILVGADDASREDLVKRISLKLHEASVKDLLILAQFPQITRYDVDLVHRIVNQYFVHHKFNRDSDDIERSEKGADNLLLGHGSSLNVAKLIDEYLAEIADDPNLLLARFIDLSQSIPEFARPIHDRLYKAIDIYLKVHPNLTKADKRKICGLIDVKKLTTEASMHAAQNERLPLRVVVQVLFFEQVRVSAGVEAQNNNSRDSSSAMTSIDEECPKELDNSKSLKHNVGHMTINEDIQKTQLAKKSSKNSRSGMKLLPSRSRRIFDKLWIVGKGHGEGRSPEMSGSSQSPTSVVPVHMKSSGTYARQRRHSIS 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1537919 1542568 + CmaCh05G003480.1 Cma05g00348 294466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00348 699 MobiDBLite consensus disorder prediction 581 596 - -
Cma05g00348 699 ProSiteProfiles BTB domain profile. 115 183 IPR000210 GO:0005515
Cma05g00348 699 CDD BTB_POZ_NPY3-like 107 210 - -
Cma05g00348 699 PANTHER OS12G0117600 PROTEIN 90 683 IPR043454 -
Cma05g00348 699 Pfam NPH3 family 297 550 IPR027356 -
Cma05g00348 699 MobiDBLite consensus disorder prediction 581 600 - -
Cma05g00348 699 SUPERFAMILY POZ domain 107 200 IPR011333 -
Cma05g00348 699 MobiDBLite consensus disorder prediction 661 699 - -
Cma05g00348 699 MobiDBLite consensus disorder prediction 667 684 - -
Cma05g00348 699 Pfam BTB/POZ domain 112 202 IPR000210 GO:0005515
Cma05g00348 699 ProSiteProfiles NPH3 domain profile. 297 574 IPR027356 -
Cma05g00348 699 Gene3D Potassium Channel Kv1.1; Chain A 93 208 IPR011333 -
Cma05g00348 699 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 90 683 IPR029961 GO:0060918|GO:0099402
Cma05g00348 699 SMART BTB_4 115 213 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00348 - - - cpep:111805726 1201.04
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00348 Cma12g00365 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00924 Cma-Chr3:6650330 Cma05g00348 Cma-Chr5:1537919 0 dispersed
Cma04g00453 Cma-Chr4:2320353 Cma05g00348 Cma-Chr5:1537919 0 dispersed
Cma05g00348 Cma-Chr5:1537919 Cma16g00326 Cma-Chr16:1534755 0 dispersed
Cma19g00873 Cma-Chr19:8076432 Cma05g00348 Cma-Chr5:1537919 2.62E-71 dispersed
Cma12g00365 Cma-Chr12:1864577 Cma05g00348 Cma-Chr5:1537919 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g581 . . . . . . . . Cmo05g00352 Cmo12g00318 . Cma05g00348 . Car12g00348 Sed14g1268 Cpe07g00324 . Bhi04g00051 Tan02g2763 Cmetu04g0384 . . . . . . . . . . . . . . . . . . Cme03g01576 Blo17g00002 . Bda01g01360 . Bpe14g00601 . . Bma02g00007 . . . . Cma12g00365 . Car05g00294 Cpe11g00294 . . . . . . . . Cla08g01367 Cam08g1836 Cec08g1415 Cco08g1544 Clacu08g1531 . Cre08g1315 Lsi08g01250 . Chy03g01083 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004771 0 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00348 Cma_Chr05 FPKM 4.248571 3.32966 3.153391 3.832097 36.48888 36.726139 39.649635 0.068008 0.0 0.085436