Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00350 ATGTCGGACGAAGAGCATCAATTCGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAGGCCGGAACCATCCGCAAGAATGGTTACCTTGTCATCAAGGGCCGTCCTTGTAAGGTAGTTGAGGTTTCTACGTCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTATATATTCACCACCAAAAAAACTTGAAGATATTGTTCCATCTTCCCACAACTGTGATGTTCCTGAGGTTACTCGTACAGATTATCAGCTTATCGACATCTCTGAAGATGGATTTGTGAGCCTCTTGACTGACAACGGAAGCACAAAGGATGATTTGAGGCTTCCTACGGATGATAGTTTACTTACTCAGATTAAAGATGGGTTTGCAGGAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAGTTAA 474 45.99 MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHFIYSPPKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTDDSLLTQIKDGFAGGKDLVVSVMSAMGEEQICGLKDIGPKS 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1543134 1545347 - CmaCh05G003500.1 Cma05g00350 294468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00350 157 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cma05g00350 157 SUPERFAMILY Translation proteins SH3-like domain 15 90 IPR008991 -
Cma05g00350 157 Gene3D - 1 82 IPR014722 -
Cma05g00350 157 PIRSF Transl_init_eIF5A 1 154 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cma05g00350 157 SMART eIF_5a_2 82 151 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma05g00350 157 CDD S1_eIF5A 83 153 - -
Cma05g00350 157 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma05g00350 157 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 83 151 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma05g00350 157 PANTHER BNAA07G09420D PROTEIN 1 153 - -
Cma05g00350 157 SUPERFAMILY Nucleic acid-binding proteins 83 153 IPR012340 -
Cma05g00350 157 MobiDBLite consensus disorder prediction 1 22 - -
Cma05g00350 157 Gene3D - 83 156 IPR012340 -
Cma05g00350 157 TIGRFAM eIF_5A: translation elongation factor IF5A 18 149 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00350 Cma09g00559 CCT
Cma01g01640 Cma05g00350 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00350 Cma-Chr5:1543134 Cma18g01122 Cma-Chr18:9117309 2.63E-99 dispersed
Cma05g00350 Cma-Chr5:1543134 Cma09g00411 Cma-Chr9:1742982 5.28E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00350 K03263 K02180 csv:101211156 293.893